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Paul Hobson phobson @Geosyntec Portland, OR, USA Water Resource Engineer

Geosyntec/pygridtools 22

🌐 Miscellaneous utilities to accompany pygridgen

matplotlib/mpl-probscale 21

Real probability scales for matplotlib

Geosyntec/cloudside 6

🌧 Simple weather data visualization and downloads

phobson/bridgescour 2

Data and python tools to analyze my thesis data

phobson/cloudside 2

Simple weather data visualization and downloads

phobson/gefdc 1

Fortran-based grid utilities for EFDC models

phobson/homebrew 1

The missing package manager for OS X.

phobson/altair 0

Declarative statistical visualization library for Python

phobson/arcutils 0

Don't pull your hair out with arcpy

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issue commentmatplotlib/matplotlib

Plotting a pandas DataFrame with string MultiIndex

@mwaskom is that a boxplot of the column labels?

kasra-keshavarz

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issue commentmatplotlib/matplotlib

Plotting a pandas DataFrame with string MultiIndex

Perhaps, but there's still a question of what to do with the labels. There's literally no limit to how level there might be.

If we punt and tell the use to provide labels, there no promise that the labels and columns of the array line up.

I'm not saying this isn't possible, or even that we shouldn't, But I think this is a complex topic and there are solutions in the ecosystem that already exist

kasra-keshavarz

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issue commentmatplotlib/matplotlib

Plotting a pandas DataFrame with string MultiIndex

Potential scope creep of an API that handles hierarchical index objects:

  • default formating (string joining) of the labels
  • grouped sections
  • mapping levels as facets (e.g., colors, symbols) of the plots.

AFAICT, seaborn went down this road and decided to not mess with hierarchical indexes.

A more sensible approach in pandas:

df.groupby(level='second').boxplot()

image

Here's how I'd do this in seaborn:

ax = (
    df.rename_axis(columns='third')
      .stack()
      .to_frame('value')
      .reset_index()
      .pipe(
          (seaborn.boxplot, 'data'),
          x='third', y='value', hue='second'
      )
)

image

And then here's good ol' Hobson-style horror code:

import numpy
import pandas
from matplotlib import pyplot
from matplotlib import cbook

arrays = [
    ['bar', 'baz', 'foo', 'qux'],
    ['one', 'two']
]
cols = ['un', 'deux', 'trois', 'quatre', 'cinq']
index = pandas.MultiIndex.from_product(arrays, names=['first', 'second'])
data = numpy.random.randn(8,5)

df = pandas.DataFrame(data, index=index, columns=cols)
stats = (
   df.rename_axis(columns='third')
     .stack()
     .to_frame('value')
     .reset_index()
     .groupby(['second', 'third'], sort=False)['value']
     .apply(lambda g: pandas.Series(cbook.boxplot_stats(g)).loc[0])
     .unstack(level=-1)
     .assign(label=lambda df: df.index.map(lambda x: '\n&\n'.join(x))) 
     .reset_index(drop=True)
     .pipe(lambda df: [row.to_dict() for _, row in df.iterrows()])
)

fig, ax = pyplot.subplots()
bp_artists = ax.bxp(stats)

image

kasra-keshavarz

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issue commentmatplotlib/matplotlib

Plotting a pandas DataFrame with string MultiIndex

Even if it's simple to get the values out, I'm not terribly interested in support multi-index rows or columns in pandas DataFrames.

I would argue that out of the box, pandas doesn't do awesome handling labels:

image

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update data prep steps [ci skip]

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Merge pull request #50 from phobson/redoc-dataprep update data prep steps [ci skip]

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Self-referential links in the README

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correct name of raw endpoint

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updated v0.2.4

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MNT: Re-rendered with conda-build 3.19.2, conda-smithy 3.7.10, and conda-forge-pinning 2020.08.21.04.46.41

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Merge pull request #16 from regro-cf-autotick-bot/0.2.4_h2a9b08 mpl-probscale v0.2.4

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mpl-probscale v0.2.4

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Dependency Analysis

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Analysis of the source code shows a discrepancy between the library's imports and the package's stated requirements in the meta.yaml.

Packages found in the meta.yaml but not found by inspection:

  • pytest
+42 -224

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Real probability scales for matplotlib

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Real probability scales for matplotlib

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Real probability scales for matplotlib

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Real probability scales for matplotlib

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add python 3.5 to basic test runner

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follow the linter's advice

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PR opened Geosyntec/wqio

break out the linter into its own action
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Paul Hobson

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Create coverage.yml

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Paul Hobson

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don't submit coverage via travis

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Paul Hobson

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remove travis

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Paul Hobson

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Merge pull request #178 from Geosyntec/coverage-action-1 Create coverage.yml

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Paul Hobson

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Create coverage.yml

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Paul Hobson

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don't submit coverage via travis

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Paul Hobson

commit sha f391916b22d5b8a38db151ecc415ed43dd5fd3dd

remove travis

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Paul Hobson

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Merge pull request #178 from Geosyntec/coverage-action-1 Create coverage.yml

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PR merged Geosyntec/wqio

Create coverage.yml
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Paul Hobson

commit sha c10d84a56fb50b3792158d2d24454f62c620cb91

Create coverage.yml

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Paul Hobson

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don't submit coverage via travis

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Paul Hobson

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remove travis

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don't submit coverage via travis

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Paul Hobson

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gzip report in top dir

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don't spec the file

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Paul Hobson

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spec coverage file directly

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PR opened Geosyntec/wqio

Create coverage.yml
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Paul Hobson

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GH actions for CI

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Paul Hobson

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try to exclude again

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Paul Hobson

commit sha 9e4f479a73ed749e76529bcb3e41135e97dd0adf

use the correct actions file

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Paul Hobson

commit sha 497e7b3742aa21fa55c3a0234d07b82841287658

update testing imports, wilcoxon results

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Paul Hobson

commit sha e87ba38dd5b1328acddde6dce74ebf0dae32d32d

update for new pandas

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Paul Hobson

commit sha 2d631607193973b0a381a5cf108fd1106284b02e

update tests and formatting

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Paul Hobson

commit sha 8fcd57cc8b8365208eeee0162438307db0ca0dbb

Merge pull request #173 from Geosyntec/more-gh-actions-1 Create python-package.yml

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Paul Hobson

commit sha eb599c4e578efa85d8d91ce2a1f024986143fda0

bump version to v0.5.1

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Paul Hobson

commit sha b6ff9a08df94af940fc3f3d0aa0d86566c750625

Merge pull request #174 from Geosyntec/pkg-metadata-match-version bump version to v0.5.1

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Paul Hobson

commit sha 1f15aeae6cc1529056919de41b580f0491538ec7

Create python-publish.yml

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Paul Hobson

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Merge pull request #175 from Geosyntec/pypi-publish-action Create python-publish.yml

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Paul Hobson

commit sha 4ed1ed675bd4fe5cfc7a6cd3075326cf68f901af

rename the workflow that runs the basic tests

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Paul Hobson

commit sha 3c7da82ab379bcffc6a1b88d77de36a73f06230e

rename the workflow that runs black

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Paul Hobson

commit sha baaabca632d19cdda9119273ab937ec3722aadbf

add workflow to run img-comp tests

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Paul Hobson

commit sha 231994fcdd733648b0237eae9334fb269a643f1c

actually rename the workflow in their configs

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Paul Hobson

commit sha 666378dfbca7092f80e1dd1985b46f62fc6295da

Merge pull request #176 from Geosyntec/gh-actions-rev GH actions revisions

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Paul Hobson

commit sha 0643cffb075ec1c92acca24f928b33bf4571bfa3

actually rename the workflow in their configs

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Paul Hobson

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remove matrix section

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Paul Hobson

commit sha 3d9f08dadd0578eae6185539f74b5df86eee59d9

optionally pull img comp tolerance from environment

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Paul Hobson

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try to set img tolerance in action config

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