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Uri Laserson laserson Laserson Lab @ Icahn School of Medicine at Mount Sinai New York, NY http://lasersonlab.org/

laserson/dsq 38

Distributed Streaming Quantiles (for PySpark)

laserson/avro2parquet 33

Hadoop MapReduce tool to convert Avro data files to Parquet format.

hgadre/darn 4

Distributed Resource Management Application API (DRMAA) implementation for YARN

laserson/biopython 2

Official git repository for Biopython (converted from CVS)

laserson/ClientForm 1

ClientForm python module by John J. Lee

laserson/adam 0

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

laserson/airr-formats 0

Open source formats for AIRR data using Thrift.

laserson/airr-standards 0

MiAIRR: AIRR Community Minimal Standards WG

laserson/avro 0

Mirror of Apache Avro

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Uri Laserson

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Updates to dotfiles

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PR merged lasersonlab/phip-stat

small tweaks

Some minor fixes I made a few months ago that I had forgotten to do a PR for.

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Add --reference-quantile argument hit calling

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Tim O'Donnell

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Change numpy.matmul to numpy.dot to avoid numpy/pandas interaction bug https://github.com/numpy/numpy/issues/13712

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Tim O'Donnell

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Add --discard-sample-reads-fraction to call-hits command

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Tim O'Donnell

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fix

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Tim O'Donnell

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Fix clipped factorization model for tensorflow2

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Uri Laserson

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Merge pull request #17 from lasersonlab/202005b small tweaks

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startedjay0lee/got-your-back

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issue closedlaserson/squarify

Variable text options

Dear all, Is there a way to adapt the "fontsize" parameter for labels as a function of boxes sizes?

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pescap

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Variable text options

You can see how the plot is constructed here from relatively simple matplotlib calls. It probably isn't too difficult to implement this in your own app.

pescap

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Uri Laserson

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Restructured Hardy CLI

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Uri Laserson

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Minor README fix

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Uri Laserson

commit sha 3e7f2e6845de687ec55dc0888e9ae03c06f5cf79

Added prealloc method for merging columns

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Uri Laserson

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Added bowtie2 snakefile

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WIP automated docs

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Added Terminal settings

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Updates based on latest machine

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Uri Laserson

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Harmonized macos with upstream

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