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Jake Lever jakelever Stanford University Palo Alto, California https://twitter.com/jakelever0 Working on biomedical text mining

jakelever/cancermine 28

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

jakelever/civicmine 13

Text mining cancer biomarkers for the CIVIC database

jakelever/biowordlists 6

Biomedical wordlists (of drugs, genes, etc) for several text mining projects

jakelever/brokenlinks 4

Tool for scanning a website for broken links

jakelever/biotext 2

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!

jakelever/corona-ml 2

Machine learning to text-mine coronavirus research for CoronaCentral.ai

jakelever/Ab3P 1

Abbreviation definition dection library trained on PubMed abstracts

jakelever/bio2vec 1

Scripts to run word2vec on PubMed corpus files

jakelever/blah4 1

Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relations

startedjakelever/corona-web

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startedjakelever/corona-ml

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issue openedjakelever/kindred

Evaluate returns zero

When tried to call on the tutorial example with evaluate method it returns 0.0. Any suggestions?

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startedjakelever/pubrunner

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startedjakelever/textae

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startedjakelever/cancermine

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startedjakelever/brokenlinks

started time in 23 days

issue closedjakelever/kindred

Saving trained classifier

I've trained the RelationClassifier() on a corpus and want to save and re-use it in future as it'll be annoying to train it every time. But I couldn't find an option to save it. It'll be very helpful, if anyone suggests a way to save trained RelationClassifier().

closed time in 25 days

manjumbmb97

issue commentjakelever/kindred

Saving trained classifier

Thank you. It works :)

manjumbmb97

comment created time in 25 days

issue openedjakelever/kindred

Saving trained model

I've trained the RelationClassifier() on a corpus and want to save and re-use it in future as it'll be annoying to train it every time. But I couldn't find an option to save it. It'll be very helpful, if anyone suggests a way to save trained RelationClassifier().

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startedjakelever/kindred

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startedjakelever/corona-ml

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startedjakelever/kindred

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startedjakelever/civicmine

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issue commentjakelever/cancermine

Data update v29 - increase in unfiltered and drop in sentences

Is this still relevant? If so, what is blocking it? Is there anything you can do to help move it forward?

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.

sigven

comment created time in 2 months

fork personx000/corona-web

Website for viewing database of Coronavirus research at CoronaCentral.ai

https://coronacentral.ai/

fork in 2 months

fork personx000/corona-ml

Machine learning to text-mine coronavirus research for CoronaCentral.ai

https://coronacentral.ai/

fork in 2 months

delete branch jakelever/corona-web

delete branch : dependabot/npm_and_yarn/lodash-4.17.20

delete time in 2 months

PR closed jakelever/corona-web

Bump lodash from 4.17.15 to 4.17.20 dependencies

Bumps lodash from 4.17.15 to 4.17.20. <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/lodash/lodash/commit/ded9bc66583ed0b4e3b7dc906206d40757b4a90a"><code>ded9bc6</code></a> Bump to v4.17.20.</li> <li><a href="https://github.com/lodash/lodash/commit/63150ef7645ac07961b63a86490f419f356429aa"><code>63150ef</code></a> Documentation fixes.</li> <li><a href="https://github.com/lodash/lodash/commit/00f0f62a979d2f5fa0287c06eae70cf9a62d8794"><code>00f0f62</code></a> test.js: Remove trailing comma.</li> <li><a href="https://github.com/lodash/lodash/commit/846e434c7a5b5692c55ebf5715ed677b70a32389"><code>846e434</code></a> Temporarily use a custom fork of <code>lodash-cli</code>.</li> <li><a href="https://github.com/lodash/lodash/commit/5d046f39cbd27f573914768e3b36eeefcc4f1229"><code>5d046f3</code></a> Re-enable Travis tests on <code>4.17</code> branch.</li> <li><a href="https://github.com/lodash/lodash/commit/aa816b36d402a1ad9385142ce7188f17dae514fd"><code>aa816b3</code></a> Remove <code>/npm-package</code>.</li> <li><a href="https://github.com/lodash/lodash/commit/d7fbc52ee0466a6d248f047b5d5c3e6d1e099056"><code>d7fbc52</code></a> Bump to v4.17.19</li> <li><a href="https://github.com/lodash/lodash/commit/2e1c0f22f425e9c013815b2cd7c2ebd51f49a8d6"><code>2e1c0f2</code></a> Add npm-package</li> <li><a href="https://github.com/lodash/lodash/commit/1b6c282299f4e0271f932b466c67f0f822aa308e"><code>1b6c282</code></a> Bump to v4.17.18</li> <li><a href="https://github.com/lodash/lodash/commit/a370ac81408de2da77a82b3c4b61a01a3b9c2fac"><code>a370ac8</code></a> Bump to v4.17.17</li> <li>Additional commits viewable in <a href="https://github.com/lodash/lodash/compare/4.17.15...4.17.20">compare view</a></li> </ul> </details> <details> <summary>Maintainer changes</summary> <p>This version was pushed to npm by <a href="https://www.npmjs.com/~bnjmnt4n">bnjmnt4n</a>, a new releaser for lodash since your current version.</p> </details> <br />

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dependabot[bot]

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pull request commentjakelever/corona-web

Bump lodash from 4.17.15 to 4.17.20

Looks like lodash is up-to-date now, so this is no longer needed.

dependabot[bot]

comment created time in 2 months

delete branch jakelever/corona-web

delete branch : dependabot/npm_and_yarn/elliptic-6.5.3

delete time in 2 months

PR closed jakelever/corona-web

Bump elliptic from 6.5.2 to 6.5.3 dependencies

Bumps elliptic from 6.5.2 to 6.5.3. <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/indutny/elliptic/commit/8647803dc3d90506aa03021737f7b061ba959ae1"><code>8647803</code></a> 6.5.3</li> <li><a href="https://github.com/indutny/elliptic/commit/856fe4d99fe7b6200556e6400b3bf585b1721bec"><code>856fe4d</code></a> signature: prevent malleability and overflows</li> <li>See full diff in <a href="https://github.com/indutny/elliptic/compare/v6.5.2...v6.5.3">compare view</a></li> </ul> </details> <br />

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pull request commentjakelever/corona-web

Bump elliptic from 6.5.2 to 6.5.3

Looks like elliptic is up-to-date now, so this is no longer needed.

dependabot[bot]

comment created time in 2 months

PR opened jakelever/corona-web

Bump lodash from 4.17.15 to 4.17.20

Bumps lodash from 4.17.15 to 4.17.20. <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/lodash/lodash/commit/ded9bc66583ed0b4e3b7dc906206d40757b4a90a"><code>ded9bc6</code></a> Bump to v4.17.20.</li> <li><a href="https://github.com/lodash/lodash/commit/63150ef7645ac07961b63a86490f419f356429aa"><code>63150ef</code></a> Documentation fixes.</li> <li><a href="https://github.com/lodash/lodash/commit/00f0f62a979d2f5fa0287c06eae70cf9a62d8794"><code>00f0f62</code></a> test.js: Remove trailing comma.</li> <li><a href="https://github.com/lodash/lodash/commit/846e434c7a5b5692c55ebf5715ed677b70a32389"><code>846e434</code></a> Temporarily use a custom fork of <code>lodash-cli</code>.</li> <li><a href="https://github.com/lodash/lodash/commit/5d046f39cbd27f573914768e3b36eeefcc4f1229"><code>5d046f3</code></a> Re-enable Travis tests on <code>4.17</code> branch.</li> <li><a href="https://github.com/lodash/lodash/commit/aa816b36d402a1ad9385142ce7188f17dae514fd"><code>aa816b3</code></a> Remove <code>/npm-package</code>.</li> <li><a href="https://github.com/lodash/lodash/commit/d7fbc52ee0466a6d248f047b5d5c3e6d1e099056"><code>d7fbc52</code></a> Bump to v4.17.19</li> <li><a href="https://github.com/lodash/lodash/commit/2e1c0f22f425e9c013815b2cd7c2ebd51f49a8d6"><code>2e1c0f2</code></a> Add npm-package</li> <li><a href="https://github.com/lodash/lodash/commit/1b6c282299f4e0271f932b466c67f0f822aa308e"><code>1b6c282</code></a> Bump to v4.17.18</li> <li><a href="https://github.com/lodash/lodash/commit/a370ac81408de2da77a82b3c4b61a01a3b9c2fac"><code>a370ac8</code></a> Bump to v4.17.17</li> <li>Additional commits viewable in <a href="https://github.com/lodash/lodash/compare/4.17.15...4.17.20">compare view</a></li> </ul> </details> <details> <summary>Maintainer changes</summary> <p>This version was pushed to npm by <a href="https://www.npmjs.com/~bnjmnt4n">bnjmnt4n</a>, a new releaser for lodash since your current version.</p> </details> <br />

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create barnchjakelever/corona-web

branch : dependabot/npm_and_yarn/lodash-4.17.20

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PR opened jakelever/corona-web

Bump elliptic from 6.5.2 to 6.5.3

Bumps elliptic from 6.5.2 to 6.5.3. <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/indutny/elliptic/commit/8647803dc3d90506aa03021737f7b061ba959ae1"><code>8647803</code></a> 6.5.3</li> <li><a href="https://github.com/indutny/elliptic/commit/856fe4d99fe7b6200556e6400b3bf585b1721bec"><code>856fe4d</code></a> signature: prevent malleability and overflows</li> <li>See full diff in <a href="https://github.com/indutny/elliptic/compare/v6.5.2...v6.5.3">compare view</a></li> </ul> </details> <br />

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