ethanwhite ( Ethan White (he/him) )

If you are wondering where the data of this site comes from, please visit https://api.github.com/users/ethanwhite/events. GitMemory does not store any data, but only uses NGINX to cache data for a period of time. The idea behind GitMemory is simply to give users a better reading experience.

Ethan White (he/him) ethanwhite @weecology, Univ of Florida Gainesville, FL http://ethanwhite.org Professor at University of Florida. Moore Investigator in Data-Driven Discovery. I work on ecology, data, open science, & open source.

repos

182

gists

20

followers

239

following

25

datacarpentry/semester-biology 52

bendmorris/neon_portal 3

Django web app for data entry into the dodobase system.

embaldridge/commonness-and-rarity 2

This repository contains some ideas for several projects exploring the commonness and rarity of species.

bendmorris/swc-shell 1

ctb/2016-phil-openscience 1

aanaranjo/large-small-ts-analysis 0

ADJSanchez/Diego-Juarez 0

ahhurlbert/brubertlab 0

sandbox for learning github for the Brubert lab

aroopsind/data_carpentry 0

UF Course Fall 2015; data computation in r; Professor Ethan White

budell/DataCarpentryWeek9 0

issue openedweecology/retriever

Add Forest Health Monitoring historical dataset

From 1991 to 1999 the USDA collected information of individual tree crown and health for trees in the FIA. The data is stored in .csv files, but there are some challenges for cleaning and harmonizing it.

A description of the dataset can be found here: https://www.fs.fed.us/foresthealth/protecting-forest/forest-health-monitoring/ Data can be found here: https://www.fia.fs.fed.us/tools-data/other_data/index.php

created time in an hour

created tagweecology/PortalData

Official Repo of the Portal Project Data

created time in an hour

push eventweecology/PortalData

Weecology Deploy Bot

commit sha 45fcbd1127a34b666b22e2584c67785b5c5362a2

Update data and trigger archive: GitHub Build 133 [skip ci] [cron]

push time in an hour

issue commentweecology/retriever

Add fire and management history data

[ ] Activity Range Vegetation Improvement: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.Activity_RngVegImprove.zip
[ ] Activity Silviculture Timber Stand Improvement: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.Activity_SilvTSI.zip
[ ] SilvicultureReforestation: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.Activity_SilvReforestation.zip
[ ] Timber Harvests: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.Activity_TimberHarvest.zip
[ ] FIRESTAT Fire Occurrence - Yearly Update: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.Fire_Occurrence_FIRESTAT_YRLY.zip
[ ] MTBS Fire Occurrence Points: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.MTBS_FIRE_OCCURRENCE_PT.zip
[ ] MTBS Burn Area Boundary: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.MTBS_BURN_AREA_BOUNDARY.zip
[ ] National USFS Final Fire Perimeter: https://data.fs.usda.gov/geodata/edw/edw_resources/shp/S_USA.FinalFirePerimeter.zip
[ ] Spatial Wildfire Occurrence Data for the United States, 1992-2015 (FPA FOD 4th Edition): https://data.fs.usda.gov/geodata/edw/edw_resources/fc/S_USA.FPA_FOD_4thedition.gdb.zip

MarconiS

comment created time in 2 hours

issue openedweecology/retriever

Global river density, seasonal and surface water occurrence and upstream area

From the same source of soil data (www.OpenLandMap.org) there is a dataset of global density of rivers and upstream area that can be used to infer the effect of hydrology on forest dynamics and diversity at scale.

Here is the link to the derived dataset: Global river density, seasonal and surface water occurrence and upstream area: https://zenodo.org/record/3355007

created time in 2 hours

issue commentweecology/retriever

Add Soil data macrosys

Here is the link to the Zenodo archive for all derived datasets of global soil properties (0.065km2 spatial resolution)

[ ] Soil bulk density: https://zenodo.org/record/2525665
[ ] Soil pH in H2O: https://zenodo.org/record/2525664
[ ] Soil texture classes (USDA system): https://zenodo.org/record/2525817
[ ] Coarse fragments %: https://zenodo.org/record/2525682
[ ] Silt content in % (kg / kg): https://zenodo.org/record/2525676
[ ] Clay content in % (kg / kg): https://zenodo.org/record/2525663
[ ] Sand content in % (kg / kg): https://zenodo.org/record/2525662
[ ] Predicted USDA soil suborders : https://zenodo.org/record/2657408
[ ] Predicted USDA soil orders: https://zenodo.org/record/2658183
[ ] Soil organic carbon stock in kg/m2: https://zenodo.org/record/2536040
[ ] Predicted USDA soil orders : https://zenodo.org/record/2658183
[ ] Soil organic carbon content in x 5 g / kg at 6 standard depths: https://zenodo.org/record/2525553
[ ] Soil water content (volumetric %): https://zenodo.org/record/2784001
[ ] Soil available water capacity in mm derived for 5 standard layers : https://zenodo.org/record/2629149

henrykironde

comment created time in 2 hours

issue commentweecology/retriever

Add Soil water content data - macrosys

@MarconiS https://gitlab.com/openlandmap/global-layers

henrykironde

comment created time in 2 hours

issue openedweecology/retriever

Add fire and management history data

There are many geospatial layers collected and managed by Forest Service programs available in a map service here: https://data.fs.usda.gov/geodata/edw/datasets.php

These data are shapefiles and contain many different kind of information. The most useful for ongoing projects, right now, are those containing fire occurrence, prescribed fire management, and generally silviculture and forest cut managements.

created time in 2 hours

push eventweecology/DeepForest-pytorch

commit sha ddf55021fda8a84d71583122511786fee8fdfee1

add a single score threshold argument

push time in 2 days

push eventweecology/DeepForest_Model

commit sha d41b3693d5298b69e94a22459482c521d4d683f8

larger batch size

commit sha c91989748ed83b02ab44ce6fbb6cadb819028d59

merge config

push time in 2 days

push eventweecology/DeepForest_Model

commit sha b2bf25a4d191b9cbf47acfa52d091f744fd4383e

Score threshold

push time in 2 days

push eventweecology/DeepForest_Model

commit sha 35d0fbf30499ebcfa392970ffcb3d2107af7f1f2

save state dict

push time in 2 days

push eventweecology/DeepForest-pytorch

commit sha bc6217bc2b25c6df0efcfdeefd3284d34174be26

Bump version: 0.1.7 → 0.1.8

push time in 2 days

push eventweecology/DeepForest-pytorch

commit sha b9cbf40ad28a98fb6cb02eb708b717f56385a854

fix coloring function

push time in 2 days

delete branch weecology/portalr

delete branch : caching

delete time in 3 days

push eventweecology/portalr

commit sha 5edef2a4a093f76b23d11993f038e323e8558653

Fewer runners, add rspm for pkgdown and codecov (#262)

push time in 3 days

PR merged weecology/portalr

Caching

+5 -3

7 commit in weecology/portalr/tree/caching weecology/portalr/tree/main

0 comment

3 changed files

pr closed time in 3 days

push eventweecology/DeepForest_Model

commit sha 90443553143b2670a927f20cb385ea3814632653

new trainer method

push time in 3 days

push eventweecology/DeepForest_Model

commit sha 791c1c9f7cd268d1665d2a11ce20a107f16fb707

Add nms threshold

push time in 3 days

created tagweecology/DeepForest-pytorch

Pytorch implementation of the deepforest model for tree crown RGB detection.

created time in 3 days

push eventweecology/DeepForest-pytorch

commit sha 71b17d223fe4b4369a931b20b1d48eeb6fe73b56

load model

commit sha 8cc5faaf063b756dc1b8ec9011ae200f2dd7306e

reduce nms threshold

commit sha 5c0abcec5873c7c20d9fc67e072ebf03e3bd1ef8

Bump version: 0.1.6 → 0.1.7

push time in 3 days

push eventweecology/portalr

commit sha f70ae017c8296ae40a5bdd79200d0d89cc173600

Update check-standard.yaml

push time in 3 days

push eventweecology/NeonTreeEvaluation

commit sha d808bea8022b73f2ffff4b39273dfbaa9fe6bbbf

add corresponding hsi and chm data from new 2019 plots

commit sha 5215ae413fd08944746b522cf8586fb1b1823a2a

add missing 2018 plots

commit sha 086c164fe56af0107e91296cee79ec2095dabbe5

2018 hyperspec

push time in 3 days

push eventweecology/portalr

commit sha 3490441c38a5fc45a0d6b9e62c24997253ccfb04

Update check-standard.yaml

push time in 3 days

push eventweecology/portalr

commit sha cac1d7fe8ca910ea5aa2ffd493cb64e39b91804b

Update check-standard.yaml

push time in 3 days

push eventweecology/portalr

commit sha 35717268cb5a6ad3a699235755123919b0d32be4

Update check-standard.yaml

push time in 3 days

push eventweecology/portalr

commit sha 4ddf50bea728e46ddf311694b587c479e1249869

Update check-standard.yaml

push time in 3 days

delete branch weecology/PortalData

delete branch : hooks

delete time in 3 days

push eventweecology/PortalData

commit sha 4475dadc8d4c2e56cffeb728e4f162bc0afd5872

Add hooks readme, closes #298 [no version bump] (#400)

push time in 3 days

issue closedweecology/PortalData

Check tags in commit messages

I think git hooks can be used to add instructions to the default commit message, and also to check that a tag is included in a commit message. Might not be a big deal for folks who are already regularly updating PortalData, but a useful feature to include in livedat?

closed time in 3 days