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Andrea Zonca zonca San Diego Supercomputer Center @sdsc San Diego https://zonca.dev Cosmology/Astrophysics, High Performance Computing, Python. Maintainer of @healpy. Working on #CMB experiments @simonsobs & @CMB-S4 (previously Planck).

data-8/kubeadm-bootstrap 23

Supporting code + documentation for bootstrapping a kubeadm installation on bare-metal-ish machinery

hpc4cmb/toast 22

Time Ordered Astrophysics Scalable Tools

bthorne93/PySM_public 21

PySM: Software for simulating the Galactic microwave sky

Libsharp/libsharp 21

Library for fast spherical harmonic transforms, see http://arxiv.org/abs/1303.4945

lab-cosmo/i-pi-dev_archive 20

Development version of i-PI

sdsc/sdsc-summer-institute-2017 17

SDSC Summer Institute 2017 teaching material

jupyterhub/research-facilities 9

resources for developing, deploying, and using Jupyter at Research Facilities

sdsc/sdsc-summer-institute-2016 8

San Diego Supercomputer Center Summer Institute 2016

hpc4cmb/toast-workshop-ucsd-2019 4

TOAST workshop at UCSD 14-16 October 2019

hpc4cmb/toast-workshop-trieste-2019 1

TOAST workshop at IFPU Trieste 20-22 November 2019

issue commenthealpy/healpy

Release of healpy 1.15.1 and HEALPix 3.81

we could release now, I would wait a couple of days to check if we can also squeeze https://github.com/healpy/healpy/pull/735 in, so let's schedule release by this Friday. @hivon can you release HEALPix 3.8.1 in the next 2/3 weeks?

zonca

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pull request commenthealpy/healpy

Draft: Add a convenience function to compute a_lm of a circular Gaussian

@mreineck maybe you can run a simple example like this in fortran or C++ and we compare the arrays?

https://gist.github.com/35622edf0ccb6622907682280ad2296b

mreineck

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Andrea Zonca

commit sha 2f5d90617dbbb578b541d8ebca491196ad8be0b4

update cfitsio to 4.0.0

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Anto Idicherian Lonappan

commit sha d2ae4cf940efd0b8a503dd37be685a6e91bf4243

minor check beam_window is array or list.

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tomas

commit sha f6c50e2520da76362ea4cd03dfad53b2340eb258

Implementing the rotatable graticule.

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Andrea Zonca

commit sha aceee1c365865c918e88cfa476fa1033516fd13a

Merge pull request #744 from zonca/check_beam_window Check beam window type

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Andrea Zonca

commit sha 64820698cc3527d95292b58ab43495fd38e03b8a

Merge pull request #732 from F-Tomas/master Implementing the rotatable graticule.

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Andrea Zonca

commit sha 6927e7dbc50934d2a0659aa99a66d300202400fd

add rotation graticule to changelog

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Andrea Zonca

commit sha bd0ee0349a52239263f48eaceda1cb659f986e55

fix cfitsio compilation issue See https://github.com/healpy/healpy/pull/743#issuecomment-1013931554

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Andrea Zonca

commit sha 3157f9aaf646219af2ed956866304c4daf8fb646

Merge pull request #743 from zonca/update_cfitsio_4.0.0 update cfitsio to 4.0.0

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Martin Reinecke

commit sha 0670f8df1e9f413a5cd26c82150cd68646099fdc

first attempt

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Martin Reinecke

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tweaks

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Andrea Zonca

commit sha 6bd63d9c441833f85d6f4f0c0e0267c122933273

run polarization part only if requested

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pull request commentgalsci/pysm

Import COLines into PySM 3

See https://github.com/galsci/pysm/issues/103#issuecomment-1014213983

so:

  • co1 polarization fraction 0, include_high_galactic_latitude_clouds=False
  • co2 polarization fraction 0.001, include_high_galactic_latitude_clouds=False
  • co3 polarization fraction 0.001, include_high_galactic_latitude_clouds=True (not stochastic)
zonca

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issue commentgalsci/pysm

Simulation Suite

I think for synchrotron we could do s4 for uniform spectral index, s5 with varying spectral index, and we can have unpolarized co1 and polarized co2, so:

  1. d9,s4,f1,a1,co1
  2. d10,s5,f1,a1,co1
  3. d12,s5,f1,a2,co2
brandonshensley

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delete branch zonca/healpy

delete branch : update_cfitsio_4.0.0

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PR merged healpy/healpy

update cfitsio to 4.0.0
+2 -2

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Andrea Zonca

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update cfitsio to 4.0.0

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Andrea Zonca

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fix cfitsio compilation issue See https://github.com/healpy/healpy/pull/743#issuecomment-1013931554

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Andrea Zonca

commit sha 3157f9aaf646219af2ed956866304c4daf8fb646

Merge pull request #743 from zonca/update_cfitsio_4.0.0 update cfitsio to 4.0.0

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pull request commenthealpy/healpy

update cfitsio to 4.0.0

excellent, it worked fine!

zonca

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Andrea Zonca

commit sha bd0ee0349a52239263f48eaceda1cb659f986e55

fix cfitsio compilation issue See https://github.com/healpy/healpy/pull/743#issuecomment-1013931554

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reinecke

commit sha 48497d83b273dea292cb39ba31f2edb25e21cf87

work around missing libcfitsio dependency on zlib git-svn-id: svn://svn.code.sf.net/p/healpix/code/trunk@1193 5e3cd54f-fed5-4059-89be-b68eacfec290

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reinecke

commit sha edadd5ab24dec70cfdc379bac59dc2df53daf205

bump version to 3.81 git-svn-id: svn://svn.code.sf.net/p/healpix/code/trunk@1194 5e3cd54f-fed5-4059-89be-b68eacfec290

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pull request commenthealpy/healpy

update cfitsio to 4.0.0

Okay, thank you both very much. I should be able to take it from here

zonca

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PullRequestReviewEvent

Pull request review commenthealpy/healpy

Draft: Add a convenience function to compute a_lm of a circular Gaussian

 def check_max_nside(nside):         )      return 0+++def blm_gauss(fwhm, lmax, pol=False):+    """Computes spherical harmonic coefficients of a circular Gaussian beam+    pointing towards the North Pole++    Parameters+    ----------+    fwhm : float, scalar+        desired FWHM of the beam, in radians+    lmax : int, scalar+        maximum l multipole moment to compute+    pol : bool, scalar+        if True, E and B coefficients will also be computed++    Returns+    -------+    blm : array with dtype numpy.complex128+    """+    fwhm = float(fwhm)+    lmax = int(lmax)+    pol = bool(pol)+    mmax = 2 if pol else 1+    ncomp = 3 if pol else 1+    nval = Alm.getsize(lmax, mmax)++    if mmax > lmax:+        raise ValueError("lmax value too small")++    blm = np.zeros((ncomp, nval), dtype=np.complex128)+    sigmasq = fwhm * fwhm / (8 * np.log(2.0))++    for l in range(0, lmax + 1):+        blm[0, Alm.getidx(lmax, l, 0)] = np.sqrt((2 * l + 1) / (4.0 * np.pi)) * np.exp(+            -0.5 * sigmasq * l * l+        )++    for l in range(2, lmax + 1):+        val = np.sqrt((2 * l + 1) / (32 * np.pi)) * np.exp(-0.5 * sigmasq * l * l)+        blm[1, Alm.getidx(lmax, l, 2)] = val+        blm[2, Alm.getidx(lmax, l, 2)] = 1j * val

you are calling Alm.getidx(lmax, l, 2)] twice, can we do just Q inside the loop and then after the loop something like:

 blm[2] = 1j * blm[1]
mreineck

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pull request commenthealpy/healpy

update cfitsio to 4.0.0

@mreineck I see these errors in the log of Github Actions:

Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.6447470Z   ERROR: Command errored out with exit status 1:
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.6702479Z    3845 |     snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got unexpected %s", statusstr, recbuf);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.6703688Z    3845 |     snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got unexpected %s", statusstr, recbuf);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.6704976Z    3838 |       snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got %s", statusstr, recbuf);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.6888698Z    3838 |       snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got %s", statusstr, recbuf);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7202112Z    3118 |                 "Error reading EXTEND keyword value as a logical: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7203646Z    3118 |                 "Error reading EXTEND keyword value as a logical: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7204903Z    3101 |                 "Error reading GCOUNT keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7206432Z    3101 |                 "Error reading GCOUNT keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7207631Z    3088 |                 "Error reading PCOUNT keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7209162Z    3088 |                 "Error reading PCOUNT keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7210415Z    3075 |                 "Error reading BLANK keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7211977Z    3075 |                 "Error reading BLANK keyword value as an integer: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7213322Z    3058 |                 "Error reading BZERO keyword value as a double: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7215292Z    3058 |                 "Error reading BZERO keyword value as a double: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7216703Z    3041 |                 "Error reading BSCALE keyword value as a double: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7218683Z    3041 |                 "Error reading BSCALE keyword value as a double: %s", value);
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7692636Z   configure: error: could not find the cfitsio library
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7696956Z   subprocess.CalledProcessError: Command '('pkg-config', '--cflags-only-I', 'healpix_cxx >= 3.80.0')' returned non-zero exit status 1.
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7716040Z       raise CalledProcessError(retcode, cmd)
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7716840Z   subprocess.CalledProcessError: Command '['/bin/sh', '/project/healpixsubmodule/src/cxx/configure', '--prefix=/project/build/temp.linux-x86_64-3.7', '--disable-shared', '--with-pic', '--disable-maintainer-mode']' returned non-zero exit status 1.
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7717683Z   ERROR: Failed building wheel for healpy
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:17.7717943Z ERROR: Failed to build one or more wheels
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:18.0937352Z   Building wheel for healpy (pyproject.toml): finished with status 'error'
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:18.0938664Z Checking for common errors...
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:18.1022880Z ##[error]Command ['python', '-m', 'pip', 'wheel', PurePosixPath('/project'), '--wheel-dir=/tmp/cibuildwheel/built_wheel', '--no-deps'] failed with code 1. 
Build binary packages (ubuntu-latest)   Build wheels    2022-01-15T03:33:18.1174574Z ##[error]Process completed with exit code 1.

Any suggestions?

zonca

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add rotation graticule to changelog

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tomas

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Implementing the rotatable graticule.

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Merge pull request #732 from F-Tomas/master Implementing the rotatable graticule.

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PR merged healpy/healpy

Implementing the rotatable graticule.

This commit should solve the issue "Graticule rotation of projview #724". When the map is rotated, a rotated graticule can be turned on by using rot_graticule=True. Also some properties of this graticule can be set, for instance color, linestyle, linewidth etc. The rotated graticule can be used along with the "normal" graticule graticule=True. I can add example of this to the JN.

+114 -9

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feat: change default for read_map and write_map Now they both maintain dtype, added doc on how to reproduce old behaviour

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support dtypes defined as string like f4 If the dtype is defined as f4 instead of np.float32 this function was breaking

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doc: more explicit with default behaviour

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test: test new default for write_map and typestring

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test: both little and big endian

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Raise exception for rotate_alm with complex64 inputs (#704) * test: add test for complex64 input. * fix: raise exception for complex64 input in rotate_alm See #702

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Nicolas Tessore

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add map2alm_spin and alm2map_spin to doc

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import spin functions to sphtfunc module

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fix: use try/except at the end instead of modifying types

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Merge pull request #706 from ntessore/main add spin functions to sphtfunc module and doc

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feat: if getformat fails, raise an error

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reimplement spin-0 transforms

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implement review changes

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lower tolerance of test

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Merge pull request #708 from ntessore/spin-sign reimplement spin 0 transforms

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Merge branch 'main' into change_default_read_write_map

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Merge pull request #688 from zonca/change_default_read_write_map Change default for read_map and write_map

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minor check beam_window is array or list.

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Merge pull request #744 from zonca/check_beam_window Check beam window type

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Check beam window type

check beam_window is array or list.

This is #731 rebased on main to fix CI

+3 -0

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pull request commenthealpy/healpy

Draft: Add a convenience function to compute a_lm of a circular Gaussian

rebased on main to fix CI

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Remove unused imports in setup.py

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Merge pull request #737 from lpsinger/remove-unused-imports-setup-py Remove unused imports in setup.py

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Leo Singer

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Use cibuildwheel's default manylinux image We had pinned it to manylinux1, which is past end of life now.

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Update supported Python versions Python 3.6 is past end of life. Drop Python 3.6, add Python 3.10.

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Remove workaround for bug in delocate, fixed upstream

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cfitsio links against libcurl, not present by default in manylinux

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Update to the latest version of cibuildwheel

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Merge pull request #740 from lpsinger/fix-cibuildwheel Several changes to fix building of wheels

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Update HEALPix from SVN r1192 for HEALPix 3.81

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mention update HEALPix C++ on changelog closes #722

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set minimum version requirement on HEALPix Main driver is the reworking of Alice for Linear Integral Convolution

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Only build wheels for 64-bit archs (skip i686) The cibuildwheel CI job is timing out. Skip wheels for 32-bit archs (i686). These archs are very rare nowadays and it is not common for our upstream dependencies to provide wheels for them anyway. Numpy, for example, does not distribute i686 wheels. This should significantly reduce the build time because the CI job will only have to build half as many wheels. The skipped i686 wheels were the slowest anyway, because it had to build wheels for many of the dependencies too (including Numpy).

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Skip musllinux builds Our dependencies like Numpy don't distribute wheels for it yet.

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first attempt

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Implementing the rotatable graticule.

rebased on main to fix CI

F-Tomas

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Remove unused imports in setup.py

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Andrea Zonca

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Merge pull request #737 from lpsinger/remove-unused-imports-setup-py Remove unused imports in setup.py

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Leo Singer

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Use cibuildwheel's default manylinux image We had pinned it to manylinux1, which is past end of life now.

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Leo Singer

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Update supported Python versions Python 3.6 is past end of life. Drop Python 3.6, add Python 3.10.

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Leo Singer

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Remove workaround for bug in delocate, fixed upstream

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cfitsio links against libcurl, not present by default in manylinux

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Update to the latest version of cibuildwheel

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Merge pull request #740 from lpsinger/fix-cibuildwheel Several changes to fix building of wheels

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Update HEALPix from SVN r1192 for HEALPix 3.81

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mention update HEALPix C++ on changelog closes #722

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set minimum version requirement on HEALPix Main driver is the reworking of Alice for Linear Integral Convolution

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Only build wheels for 64-bit archs (skip i686) The cibuildwheel CI job is timing out. Skip wheels for 32-bit archs (i686). These archs are very rare nowadays and it is not common for our upstream dependencies to provide wheels for them anyway. Numpy, for example, does not distribute i686 wheels. This should significantly reduce the build time because the CI job will only have to build half as many wheels. The skipped i686 wheels were the slowest anyway, because it had to build wheels for many of the dependencies too (including Numpy).

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Leo Singer

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Use CIBW_SKIP instead of CIBW_ARCHS

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Leo Singer

commit sha d9d09df67606a4247e3f2aade4595fe64ddeb5aa

Skip musllinux builds Our dependencies like Numpy don't distribute wheels for it yet.

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Leo Singer

commit sha 8fbbab5b022159dc888770e397ceb9e6b1ba8fd1

Move cibuildwheel configuration from env to pyproject.toml

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Andrea Zonca

commit sha 89a8497ea041762ac8ec57d25873d928129c17cc

Merge pull request #742 from lpsinger/cibw-archs-auto64 Only build wheels for 64-bit archs (skip i686)

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Andrea Zonca

commit sha fee6dd230271f6af9afaee58b25edfd8aea0d4d1

Merge pull request #727 from zonca/healpix_3.81 Update HEALPix from SVN r1192 for HEALPix 3.81

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Andrea Zonca

commit sha 97860eac9e0ae115be548f6462019b3ad6cecb74

ci: replace Travis badge with Github Actions

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tomas

commit sha f6c50e2520da76362ea4cd03dfad53b2340eb258

Implementing the rotatable graticule.

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PR closed healpy/healpy

minor

check beam_window is array or list.

+3 -0

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antolonappan

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pull request commenthealpy/healpy

minor

See #744

antolonappan

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create barnchzonca/healpy

branch : check_beam_window

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