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yech1990/Angular_Reatful_Gin_Sqlite_template 5

Angular_Reatful_Gin_Sqlite_template

yech1990/cfutils 4

🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.

yech1990/barcoding 0

Lima - Demultiplex Barcoded PacBio Samples

yech1990/biodart 0

🔬 A dart package for bioinformatics

yech1990/Bioinformatics-Training 0

Bioinformatics training resources

yech1990/blog.yech.xyz 0

Will start blogging someday

yech1990/breakfast 0

Breakfast - a software for detecting genomic structural variants from DNA sequencing data

yech1990/cc-cert-core 0

Content outline for new Creative Commons Certification programs

PR opened neoclide/coc.nvim

fix error message in cocupdate panel.
Error on CursorMoved: Cannot read property 'length' of undefined
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fix cocupdate error message. `Error on CursorMoved: Cannot read property 'length' of undefined`

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Merge pull request #1 from yech1990/yech1990-fix-cocupdate fix cocupdate error message.

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PR merged yech1990/coc.nvim

fix cocupdate error message.

Error on CursorMoved: Cannot read property 'length' of undefined

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PR opened yech1990/coc.nvim

fix cocupdate error message.

Error on CursorMoved: Cannot read property 'length' of undefined

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Intellisense engine for Vim8 & Neovim, full language server protocol support as VSCode

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PR opened antvis/G2

remove extra line from docs

To close #2812

Checklist
  • [x] npm test passes
  • [ ] tests and/or benchmarks are included
  • [x] commit message follows commit guidelines
Description of change
  • remove extra lines in markdown files
  • fix failed in test
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📊 A highly interactive data-driven visualization grammar for statistical charts.

https://g2.antv.vision

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issue commentantvis/G2Plot

G2Plot v2 正在激情开发中,欢迎前来指导...

+1

有兴趣参入某个图形的开发嘛?如果有兴趣的话,告知一下钉钉,我拉你进群^_^

sent by email...

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:dango: An interactive and responsive charting library

https://g2plot.antv.vision

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issue commentigvteam/igv.js

Ideogram (cytobands) not rendered

Sorry about that...

I create a cytoband file with a single record, and name it into S288c.ideo.tsv. The contain of this file:

chrI	141908	162025	CEN1	gpos50

Then I render the ideogram in igv.js with these code:

      reference: {
        id: "S288C",
        name: "S. cerevisiae",
        fastaURL: xxxx
        indexURL: xxxx,
        cytobandURL: "/static/ref/cytoband/S288C.ideo.tsv"
      },

chrI is 219,929 bp in total, thus this customized feature is expected to be placed in the middle of the chromosome. But annotation always go into the terminal of the chromosome.

image

jrobinso

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issue commentigvteam/igv.js

Ideogram (cytobands) not rendered

the cytobands are in the wrong position for customized input.

jrobinso

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issue commentantvis/G2Plot

坐标轴标签无法旋转90度

rotate: Math.PI / 2

yuruwang

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startedjcrist/quickle

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issue commentOpenGene/fastp

adapters not removed - mismatches insertion/deletion

fastq can not deal with some adapters in SE mode either. for example:

@K00159:45:H4W76BBXX:5:1103:11931:62171 1:N:0:CAACTA
GAGGACGAGGAGATCGGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAACAAAACACGCCTATCGCCGGCGAAGTCCGGAAACAAGCAAAACAAAAGTCCAACCGGGGGAGAGCCTAC
+
AAAFFFJ7JJJAFFFA-AJJJJJJJJJJJJJJJJJJJJJJJAJFJJJJJJJJJJJJJJJJJJJJJJJJFFJFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJ-FAJJJFJA7FJJJJJJJJJJJJJJJJJJFFJJFJJFJFJF
@K00159:45:H4W76BBXX:5:1103:19157:62277 1:N:0:CAACTA
GAAAGTCGGAGATCGGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAGAACGGTGGTGCCCCGCTGGGAGAGGTTAACCACAACAAGAAAAATAAATGTCGCCACTGAGGCCAAC
+
AAFFFFJFJJJJJAFFJFJJJJJJJJAJJAJFJA<FFJFFJ<JJJJJJJJAFFJFJJJJJJJJJJJJFFFFJFFJJJJJJJJJJJJJJFFJJFJF<JJJJJJJJFJFAFAJJJFFJFFJFFJAAJJJAJJAJJJJJAFFFJJJJFJJJJJ
@K00159:45:H4W76BBXX:5:1103:15270:63032 1:N:0:CAACTA
AGATCGGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAATTTTTTTTTAATGTTCGGCGACCCCCCGGGATTTACCCTTCCAAAGTTTAAAAGCCCGCCGACCGGGCGGGGAAGGGA
+
AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF

(Illumina Trueseq read1 adapter)

marilyne9

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issue commentOpenGene/fastp

adapters not removed - mismatches insertion/deletion

Hi @sfchen,

I have also found that fastp can not deal with "read through" reads correctly.

A diagram from Trimmomatic:

image

Read1 fastq file:

@K00159:45:H4W76BBXX:5:1105:20791:9167 1:N:0:CAACTA
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAGAGCACACGTCTGAACTCCAGTCACCACGATATCTCGTATGCCGTCATCTGCCAGAAAAAAG
+
AAFFFJJ7JFFFJJJFAFJJJJJJJJFJJJFJJAFJJAJA-F7JJFFAJFJJJJJJJJJJ<-FJJJJJJJ<JFJFAF-<JFJFJJAJJJFJFJJJFJJFFJ<FAF<FFJFJJ7JJJJJJJJJ-FF-FJAJFJ
@K00159:45:H4W76BBXX:5:1105:12063:9027 1:N:0:CAACTA
CCGACTGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAATTTTTTTAAAAATTTACCTCCACAACCGCAAGCACAACGTACAAAGAATTCCGGGCGCACGGGCCCGACCG
+
AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ

Read2 fastq file:

@K00159:45:H4W76BBXX:5:1105:20791:9167 2:N:0:CAACTA
CGTCGTCCGGCTGTACACCTCTCAAGGTGTACTTCTCGGTGGCCGTATCATTATTAAAAACTTTTTTTCAAGCAGAAGACGGCATACGAGATTGAGTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT
+
A--77FFJ-<FF-FFF-AF7AJA-JJJ-FFF-<<J-F-FA-<F-AA-<<-<AAA-FF---AAFFAAJAF-7-<F-7AJFA<FJAAAJFAJJF<A-<7AJFF7-FF-<-<-<7FF<7FFFJAF-7<AFAA<J<
@K00159:45:H4W76BBXX:5:1105:12063:9027 2:N:0:CAACTA
CAGTCGGGATCGTCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAATTTTTTTCAAGCAGAAGACGGCACACCAGATTAGTTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCACTCAG
+
AAFFFFJFFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJFJFJJJJJJJJJJJJJFJJJJJJJJJJJJJAJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFFFJFFJJJ
marilyne9

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issue commentapache/incubator-echarts

Customize link order of Sankey diagram

I try to modify the Sankey diagram to visualize some chromosome some rearrangement events, in which one chromosome is a directional unit. The head of chromosome A is linking with chromosome B, and the tail of chromosome A is linking with chromosome C.

For more general case, if the node blocks are directional, the order of the links would matters.

yech1990

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issue commentapache/incubator-echarts

Customize like order of Sankey diagram

@100pah layoutinteration = 0 only keep the node order, but not the links.

yech1990

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issue commentapache/incubator-echarts

Customize like order of Sankey diagram

https://github.com/apache/incubator-echarts/issues/4880#issuecomment-675304446

yech1990

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issue openedapache/incubator-echarts

Customize like order of Sankey diagram

What problem does this feature solve?

Draw the links in a customized order.

What does the proposed API look like?

option = {
    series: {
        type: 'sankey',
        layout: 'none',
        focusNodeAdjacency: 'allEdges',
        data: [{
            name: 'a'
        }, {
            name: 'b1'
        }, {
            name: 'b2'
        }],
        links: [{
            source: 'a',
            target: 'b2',
            value: 5
        }, {
            source: 'a',
            target: 'b1',
            value: 3
        }]
    }
};

Instead of readering the sankey plot automatically, I would like to customize the order of the links.

a ----- b1
a
a------ b2
a--    --b1
a    x
a--    --b2

<!-- This issue is generated by echarts-issue-helper. DO NOT REMOVE --> <!-- This issue is in English. DO NOT REMOVE -->

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issue commentapache/incubator-echarts

桑基图显示排序问题

@deqingli 能否同样设置 link 的排序?即按照输入顺序来绘制link。

调整link的顺序后,render的结果不变, 看起来是以下这几行的导致的? https://github.com/apache/incubator-echarts/blob/08bd44ae83efdf45be95f2b0bde8f1ae50c0034d/src/chart/sankey/sankeyLayout.js#L480-L486

kingreatwill

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startedtripal/tripal

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issue openedapache/incubator-echarts

Add borderRadius setting for series-sankey.itemStyle

What problem does this feature solve?

I would like to set border-radius prop for the items in sankey diagram.

What does the proposed API look like?

Add borderRadius setting for series-sankey.itemStyle

<!-- This issue is generated by echarts-issue-helper. DO NOT REMOVE --> <!-- This issue is in English. DO NOT REMOVE -->

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Could not find a declaration file for module 'vue-echarts' error

@sprklinginfo Could your please show more details? I have the same problem...

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issue commentlinuxdeepin/dde-dock

Duplicate Tray Icons

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