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Tiago Ferreira tferr Janelia Research Campus Washington metropolitan area https://imagej.net/User:Tiago

tferr/IJ-guide 6

Contents and Typesetters of the ImageJ User Guide

tferr/ASA 3

Bitmap morphometry of neuronal arbors through Sholl

imagej/imagej.github.io 2

GitHub Pages for ImageJ

tferr/cx3d-mvn 2

Legacy project superseded by https://github.com/morphonets/cx3d

tferr/hIPNAT 2

:microscope::deciduous_tree::computer: hIPNAT: Image Processing for NeuroAnatomy and Tree-like structures (Archived)

tferr/cx3dp-mvn 1

Parallallized version of Cx3D

tferr/fiji 1

Fiji Is Just ImageJ

morphonets/imagej.github.io 0

GitHub Pages for ImageJ

tferr/AnalyzeSkeleton 0

ImageJ/Fiji plugin to analyze 2D and 3D skeleton images

tferr/Boostnote 0

A markdown editor for developers on Mac, Windows and Linux.

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Sam Griffin

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Fix cookbook, formats menu includes

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Sam Griffin

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Fix about, fiji menu formatting, revert _layouts/page changes

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Sam Griffin

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Fix individual page issues for previous commit (learn, about, develop menus)

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Sam Griffin

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Fix formatting on about, develop, learn include menus

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pull request commentnatverse/nat

Basic implementation of monolithic DB1 format for neuronlistfh

I think when the lock file is left, something has errored, and the datafile is not updated as I expected. I have not tested much though, because I only encountered this error a few times and both times did not investigate it thoroughly. I have not had it again since commenting here.

jefferis

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gyyxmn123

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qc qc_functions, qc_project

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gyyxmn123

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Merge branch 'master' of https://github.com/Vaa3D/vaa3d_tools

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fork hinerm/TrakEM2

ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.

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pull request commentnatverse/nat

Basic implementation of monolithic DB1 format for neuronlistfh

Hmm it is obviously supposed to delete the lock file when it finishes. Here is the code that should call it (using on.exit):

https://github.com/rdpeng/filehash/blob/07d9e9061daf9d69846ec2574ff0161f034d75d7/R/filehash-DB1.R#L274-L285

Do you have any indication that the insert is failing to complete?

jefferis

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pull request commentnatverse/nat

Basic implementation of monolithic DB1 format for neuronlistfh

@jefferis One issue I noticed is that sometime after the function has finished, a ___LOCK file for the datafile still exists. I am using it to save thousands of neurons on flyem1 and I am not sure what causes this behaviour. As far as I could see, the code did not otherwise error and I did not run things in parallel. I had to add in code to remove the LOCK file, when there is one, if I wished to save again.

jefferis

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pull request commentnatverse/nat

Zip command line character limit error fix

Dear @jonmarty, could I just ping you re my questions above? I haven't been able to reproduce your issue on my machine, so I wonder if it might be an OS interaction or possibly about path lengths. In addition, I've decided to switch behaviour to your fix when the neuronlist is greater than some threshold number of neurons. Do you have any idea when the problem became evident to you? 1000 neurons, 5000, 10000?

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pull request commentnatverse/nat

Basic implementation of monolithic DB1 format for neuronlistfh

@alexanderbates I added some extra documentation in 810e9942a0bc20b6047ef5c9c8f3ef3c4e9f2a7c as well as checks that both the metadata and data files were present after saving? Could you just confirm that looks ok to you. I've made you a reviewer of this PR, so you can go ahead and merge if you're satisfied.

jefferis

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issue closedfiji/fiji

How can I save 16 bit images sequence to amira ascii format

How can I save 16 bit images sequence to amira ascii format. Works when images are 8 bits.

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gitlabspy

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MKRangers

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swc clean up minor bug fix

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Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

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MKRangers

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NeuronRecon_Manager update

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shengdianjiang

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update for MorphoHub-GUI

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Wayne Rasband

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2021.01.16 (1.53h47; Toolbar.setIcon)

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MKRangers

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NeuronStructNavigator 1.7.0: more methods for neuron recon clean up

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created tagfiji/fiji

tagfiji-2.2.0

A "batteries-included" distribution of ImageJ :battery:

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Mark Hiner

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Bump to next development cycle Signed-off-by: Mark Hiner <hinerm@gmail.com>

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Mark Hiner

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Bye bye 2020!

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Wayne Rasband

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2021.01.15 (1.53h45; Color.* macro functions)

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Mark Hiner

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Bump to pom-scijava 30.0.0 * Updates SNT components. See https://github.com/scijava/pom-scijava/pull/155 * Removes Kappa/FilamentDetector version pins

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ajorstad

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Removing unused library

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issue closedNeuroMorph-EPFL/NeuroMorph

Cannot view stack images in Cycles render

Hello,

I am trying to render the stack images using blender cycles. The images display on the plane connected to the stack ladder in the viewport and when I render using Blender Render, however; the plane is blank when I render with Cycles. Any thoughts on how to go about resolving this? I feel like it is something simple, but the solution is eluding me.

Thank you in advance!

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loftiskg

issue commentNeuroMorph-EPFL/NeuroMorph

Cannot view stack images in Cycles render

Since the update to Blender 2.8+, images are now loaded as texture materials on mesh planes, and they display correctly in the render, so this issue is now resolved.

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aherbert

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Fixed typo in class name

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Sam Griffin

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Fix formatting on Philisophy.md, add functionality to box include

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Sam Griffin

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Fix formatting source code page

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Sam Griffin

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Fix formatting in avoidprogramfiles include

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Sam Griffin

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Fix formatting AppVeyor, Git pages

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