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Open Source Software for Epidemiology obiba http://obiba.org

obiba/agate 3

OBiBa's user ID provider.

obiba/amber-studio 1

Content management app for Amber server

obiba/datashield4j 1

DataSHIELD core classes for implementing the DataSHIELD platform in a data repository

obiba/docker-opal-rserver 1

R Server configured for Opal

obiba/genobyte 1

GenoByte is a Java API for storing and querying data resulting from the aggregation of high-throughput genotyping experiments across many subjects.

obiba/agate-doc 0

Agate documentation

obiba/agate-python-client 0

Python command lines for accessing Agate web services.

obiba/amber 0

Data collection server with administration interface

obiba/amber-collect 0

Data collection app for Amber

issue closedobiba/mica2

Archive an data access request without updating the "last update" date

Is your feature request related to a problem? Please describe. Data access requests that required to be archived are mainly the old ones and are at the bottom of the DAO list. Archiving it update the date and make it go to the top of the list with fresh data access requests that needs attention.

Describe the solution you'd like "Archive" should not change the update date.

Describe alternatives you've considered Not using the functionnality.

Additional context Using docker mica2 4.6.4

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tdemalliard

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Yannick Marcon

commit sha 7acfc38a0ad7e2f0a7fc70d5aa880006f17390d7

#4281 Do not modify last update date when (un)archiving a dar

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Yannick Marcon

commit sha c635f2e94855498c002ce95ec4f75c81df7dc8f2

#4281 Do not modify last update date when (un)archiving a dar

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Ramin Haeri Azad

commit sha 3eadb6a7a0ec1a11bebeebb0f6c011ac79e1cc87

Changed TRs and UI to adapt for Initiative / Protocol

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issue openedobiba/mica2

Archive an data access request without updating the "last update" date

Is your feature request related to a problem? Please describe. Data access requests that required to be archived are mainly the old ones and are at the bottom of the DAO list. Archiving it update the date and make it go to the top of the list with fresh data access requests that needs attention.

Describe the solution you'd like "Archive" should not change the update date.

Describe alternatives you've considered Not using the functionnality.

Additional context Using docker mica2 4.6.4

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Yannick Marcon

commit sha 99687d1af790d72c9ed53c2ccc0ce2fdc57e3e18

email templates added

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Yannick Marcon

commit sha 85534f03c997860110cb13729e44edb6a1fd3737

subjects service added

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meek0

commit sha 9107fa57741932dc5b87b9dc6960924fff95daaf

some translations for entity config

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Yannick Marcon

commit sha e03e8f05c715f5bd0a338ed8fad30dc8137aa4a7

form's schema can be reinstate from a form revision or from an import

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Ramin Haeri Azad

commit sha e285f6c5b32feb5590b397e9c0cf6b9d2fa64d82

Fixed NP exception and changed TR

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Ramin Haeri Azad

commit sha 24bd8f5b219560b8524a46746f0023861ab3b2b2

Remove harmo pop from harmo std page and TR changes

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Yannick Marcon

commit sha d64c612e2f1b55d8ed1b4d82b3e6228226a8503c

form schema can be imported at any time

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Yannick Marcon

commit sha 1d69b6911db79a2bb2fd8aeab581cb0e8407777a

field error styling

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Yannick Marcon

commit sha de5485a142beec8d231d9d0759369b18d46555b3

field error styling

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Ramin Haeri Azad

commit sha 1f42bb291ddfe295ed7fd0096134846be0b08ce3

Added new fields to Harmonization Protocol

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Yannick Marcon

commit sha 8152d858af82a78e35ca7ddeafcb919e73a0ef4c

Copy-cut-paste form items

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meek0

commit sha 136a2b8de0c5b3ffb873555f92a485a7d2e738f3

forClassName should be tied to isStatic

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meek0

commit sha 051d3e729968058ac4e06c697b8033d4985a8b8c

can now edit forClassName for vocabularies and search must test for empty forClassName

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meek0

commit sha b9aec6948b21d2e36fa75bdb36b1d919f15bec93

check for filter and filter.parendNode

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meek0

commit sha b03089942b391e03f49ac0353610288db93459a2

check for filter and filter.parendNode

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meek0

commit sha eb67a52f863b47b73a6da26ada1d70cd6d4a6593

fix result onClick events

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dependabot[bot]

commit sha e2e2b5e15c233b5dafafc6cd1e36521706633820

Bump follow-redirects from 1.14.3 to 1.14.7 in /mica-webapp (#4278) Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.3 to 1.14.7. - [Release notes](https://github.com/follow-redirects/follow-redirects/releases) - [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.14.3...v1.14.7) --- updated-dependencies: - dependency-name: follow-redirects dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha 23075fc95f07859fa9a5ffb1c61bbeadbec9b3a4

Bump path-parse from 1.0.6 to 1.0.7 in /mica-webapp (#4216) Bumps [path-parse](https://github.com/jbgutierrez/path-parse) from 1.0.6 to 1.0.7. - [Release notes](https://github.com/jbgutierrez/path-parse/releases) - [Commits](https://github.com/jbgutierrez/path-parse/commits/v1.0.7) --- updated-dependencies: - dependency-name: path-parse dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha ae2d7c48e0af50e0e815877af8540cb686183073

Bump chart.js from 2.9.3 to 2.9.4 in /mica-webapp (#4177) Bumps [chart.js](https://github.com/chartjs/Chart.js) from 2.9.3 to 2.9.4. - [Release notes](https://github.com/chartjs/Chart.js/releases) - [Commits](https://github.com/chartjs/Chart.js/compare/v2.9.3...v2.9.4) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha 395fde5923e4edd6de0659a3e2c4aa34f5f2de83

Bump hosted-git-info from 2.8.8 to 2.8.9 in /mica-webapp (#4176) Bumps [hosted-git-info](https://github.com/npm/hosted-git-info) from 2.8.8 to 2.8.9. - [Release notes](https://github.com/npm/hosted-git-info/releases) - [Changelog](https://github.com/npm/hosted-git-info/blob/v2.8.9/CHANGELOG.md) - [Commits](https://github.com/npm/hosted-git-info/compare/v2.8.8...v2.8.9) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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Ramin Haeri Azad

commit sha 7657ca37349aed8c037bc0f78071c479902b77f4

Bugfix/timezone datepicker (#4280) * Made the validation for DCE day * Updated js lib version * Added FR translation

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meek0

commit sha 447c914c54c43ed32d60189d68c0ebf619a1aa52

initial: upgrade script and entity taxonomy config

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Ramin Haeri Azad

commit sha 8d2b8b85aacc31dd74a03c4d90c4bfa280da9452

Removed the console.log

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meek0

commit sha 86f744c7aca96d061bf3e2c8aeb8a725104568ad

testing upgrade script

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meek0

commit sha b81e1e4ac58c0e7c37e7ad4d9b6f64a36af07f11

send event after taxonomy upgrade

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meek0

commit sha 189c7633d9853b4acaf6607caa48414d8033f63e

send event after taxonomy upgrade

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meek0

commit sha aab653cf8833657bb7201d32b5e90f609681467a

upgrade script for study taxo

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Ramin Haeri Azad

commit sha f8ed3fbde56716ed413a62a77fb299ce22503e45

Common vocabularies or from different classNames become static in UI

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meek0

commit sha 98d1fc57f2aec093fc6de973a702b1eaa18385b4

js build

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Ramin Haeri Azad

commit sha 0b6a67f96d36ea22307b8a5e9e9619f8ca1cc81c

Harmonization Initiative - added new fields, removed old fields

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Ramin Haeri Azad

commit sha 319f845b81634e83b8f8572d61e9062f600770d1

Removed population from HDS and corresponding admin UI.

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Ramin Haeri Azad

commit sha 374ef7304292b3ef0e6548b002f1e79ecf9f5462

Fixed isStatic in the Taxonomy editor

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meek0

commit sha 6a190b7e862024b0e8dfcc6f6b4fc3e5fa6d57bb

separate voc and terms based on studyType query; need to clear filterable queries when changing studyType query

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meek0

commit sha 5294b44f7927389b6cc442d3100bb3771157bc3c

fix for network acronyms

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meek0

commit sha 8f7d5928b04c0b8e1d844b19abf33d92e4943850

prepare queries cleanup

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issue closedobiba/mica2

Current date timepicker (angular-strap) does not create dates correctly

The angular-strap's datetime picker does not create dates from a string correctly and if a user accesses a Mica server in a different timezone the min-max input validations are not correctly set and the angular-strap's datetime make a invalid validation.

Suggested solution is to create a new angular-schemaform add-on using the html5 date capabilities. All Ng libraries are no longer maintained and forking the branch is less convenient.

Find how to stylise the html5 date widget

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kazoompa

issue commentobiba/mica2

Current date timepicker (angular-strap) does not create dates correctly

Validation is dome in Mica admin client code.

kazoompa

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release obiba/mica2

4.6.5

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Ramin Haeri Azad

commit sha f3efeef6621fb7af85cd54730122fda93caaedff

[maven-release-plugin] prepare for next development iteration

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created tagobiba/mica2

tag4.6.5

Mica is a web portal for epidemiological study consortia.

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Ramin Haeri Azad

commit sha 0f74fef3c634e4e0da794a5c39c71e7c55c0aaca

[maven-release-plugin] prepare release 4.6.5

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create barnchobiba/mica2

branch : branch-4.6.x

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commit sha eaaa7e0af24d880c050e2df4efc84248adae10b4

Bump follow-redirects from 1.14.3 to 1.14.7 in /mica-webapp (#4278) Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.3 to 1.14.7. - [Release notes](https://github.com/follow-redirects/follow-redirects/releases) - [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.14.3...v1.14.7) --- updated-dependencies: - dependency-name: follow-redirects dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha 930d6e7b9688ec8bd69f6252f0bb31ae8e776d91

Bump path-parse from 1.0.6 to 1.0.7 in /mica-webapp (#4216) Bumps [path-parse](https://github.com/jbgutierrez/path-parse) from 1.0.6 to 1.0.7. - [Release notes](https://github.com/jbgutierrez/path-parse/releases) - [Commits](https://github.com/jbgutierrez/path-parse/commits/v1.0.7) --- updated-dependencies: - dependency-name: path-parse dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha b9d3dbc6fc15403aa3e8cf0c3e3965a114bf85ce

Bump chart.js from 2.9.3 to 2.9.4 in /mica-webapp (#4177) Bumps [chart.js](https://github.com/chartjs/Chart.js) from 2.9.3 to 2.9.4. - [Release notes](https://github.com/chartjs/Chart.js/releases) - [Commits](https://github.com/chartjs/Chart.js/compare/v2.9.3...v2.9.4) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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commit sha a06a5b932f5ac14b89bc4643d3de8212b8a736df

Bump hosted-git-info from 2.8.8 to 2.8.9 in /mica-webapp (#4176) Bumps [hosted-git-info](https://github.com/npm/hosted-git-info) from 2.8.8 to 2.8.9. - [Release notes](https://github.com/npm/hosted-git-info/releases) - [Changelog](https://github.com/npm/hosted-git-info/blob/v2.8.9/CHANGELOG.md) - [Commits](https://github.com/npm/hosted-git-info/compare/v2.8.8...v2.8.9) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

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Ramin Haeri Azad

commit sha 22860cfcdf307e31af98b5f48314fcdc5d6fa14c

Bugfix/timezone datepicker (#4280) * Made the validation for DCE day * Updated js lib version * Added FR translation

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Yannick Marcon

commit sha ed82bc7c5d30b0eeb78f1a390ae4478390013348

ateempt with workbox config

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