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mutterer/figurej 12

ImageJ plugin for building figures

mutterer/Concatenate_Images_and_Register 1

PlugIn for CellTool that sends script to ImageJ

mutterer/AccuRainbow 0

A Processing library to convert wavelength to RGB color

mutterer/ActionBar 0

Custom toolbars and mini applications with ActionBar. Proceedings of the 2nd ImageJ User and Developer conference, Luxembourg, November 6-7th, 2008. http://dx.doi.org/10.5281/zenodo.35653

mutterer/arduino-at-09 0

Arduino AT-09 tutorial

mutterer/arduino-LIFI 0

LiFi Emitter and Receiver

issue commentrstudio/rstudio

Chunk option variable is not found

@ronblum I think this is related to https://github.com/rstudio/rstudio/issues/6675 and https://github.com/rstudio/rstudio/issues/7622

It seems the IDE feature of running code chunk is not taking into account the environment to evaluate the chunk option. All these issues are related to this I think.

oscardelama

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issue commentrstudio/rstudio

Chunk option variable is not found

As of Version 1.4.1103, this still does not work. Very annoying. Is there a workaround?

oscardelama

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issue openedrstudio/rstudio

Gracefully handle architecture mismatch on macOS

System details

RStudio Edition : Desktop
RStudio Version : 1.4.1103
OS Version      : macOS

Steps to reproduce the problem

  1. Install an ARM (M1) build of R on macOS. This can be done by building R from source using Homebrew, or by installing r-devel from https://mac.r-project.org/.
  2. Start RStudio.

Describe the problem in detail

An extremely unhelpful error appears.

dyld: could not load inserted library '/opt/homebrew/Cellar/r/4.0.3\_2/lib/R/lib/libR.dylib' because no suitable image found. Did find: /opt/homebrew/Cellar/r/4.0.3\_2/lib/R/lib/libR.dylib: mach-o, but wrong architecture /opt/homebrew/Cellar/r/4.0.3\_2/lib/R/lib/libR.dylib: stat() failed with errno=1

Describe the behavior you expected

An error message indicating what's actually wrong (architecture mismatch, trying to load ARM R into x64 RStudio session) and what to do about it (install the x64 version of R instead).

This problem is about to become much more common once R 4.1 is released with a formal ARM64 build. People who download the newest versions of R and RStudio on M1 Macs are likely to hit it.

We are still a ways off from a formal M1 build of RStudio (see https://github.com/rstudio/rstudio/issues/8652), but we don't have to implement M1 support to improve the user experience here.

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Gary Ritchie

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update RELEASE name

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Gary Ritchie

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add 1.5 news file

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create barnchrstudio/rstudio

branch : v1.5-ghost-orchid

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Kevin Ushey

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resolve yaml-cpp relative to root

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Nico Stuurman

commit sha 5d59fd511cc2aa6ab225d3e8517fba2d3ce4939b

Studio: Catched profile read exception and attempts to read backup profile. If that fails too, it creates a new one. Avoids previous uncaught exception causing MM failing to start upon borked profile. Underlying cause: creation of borked profile is unclear, but will be hard to figure out.

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Nico Stuurman

commit sha 206fe957d00c33a34aef3e5df534dd12826dfb80

Merge pull request #1086 from nicost/profileFix Studio: Catches profile read exception and attempts to read backup profile.

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PR merged micro-manager/micro-manager

Studio: Catches profile read exception and attempts to read backup profile.

If that fails too, it creates a new profile. Avoids previous uncaught exception causing MM failing to start upon borked profile. Underlying cause: creation of borked profile is unclear, but will be hard to figure out.

Closes #1084

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nicost

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issue closedmicro-manager/micro-manager

"Bad" profile can prevent MM from starting

There now have been several instances of users reporting that the MM splash screen does not show, which can be remedies by removing the profiles (from User\AppData\Local\Micro-Manager\UserProfiles). For instance, see: https://forum.image.sc/t/mm2-0-quit-and-wont-start-anymore/47293. Hopefully, loading one of these profiles running under a debugger will reveal enough of the underlying cause to decide how to prevent this from happening.

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nicost

PR opened micro-manager/micro-manager

Studio: Catches profile read exception and attempts to read backup profile.

If that fails too, it creates a new profile. Avoids previous uncaught exception causing MM failing to start upon borked profile. Underlying cause: creation of borked profile is unclear, but will be hard to figure out.

Closes #1084

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issue commentrstudio/rstudio

Rstudio hangs when debugging code or calling "stop", rsession at 100% CPU

Thanks @Patrick330: you are indeed correct that the issue here is in deparse.

> summaryRprof("~/scratch/rstudio.Rprof")
$by.self
                        self.time self.pct total.time total.pct
"deparse"                   50.96    92.39      50.96     92.39
"make.unique"                1.94     3.52       1.94      3.52
"[.data.frame"               1.20     2.18       3.18      5.77
"structure"                  1.02     1.85       1.02      1.85
"[["                         0.02     0.04       0.02      0.04
"anyDuplicated.default"      0.02     0.04       0.02      0.04

$by.total
                        total.time total.pct self.time self.pct
"<Anonymous>"                51.98     94.23      0.00     0.00
"deparse"                    50.96     92.39     50.96    92.39
"browser"                    50.96     92.39      0.00     0.00
"do.call"                    50.96     92.39      0.00     0.00
"paste"                      50.96     92.39      0.00     0.00
"some_function"              50.96     92.39      0.00     0.00
"[.data.frame"                3.18      5.77      1.20     2.18
"["                           3.18      5.77      0.00     0.00
"make.unique"                 1.94      3.52      1.94     3.52
"structure"                   1.02      1.85      1.02     1.85
"object.size"                 1.02      1.85      0.00     0.00
"[["                          0.02      0.04      0.02     0.04
"anyDuplicated.default"       0.02      0.04      0.02     0.04
"anyDuplicated"               0.02      0.04      0.00     0.00

$sample.interval
[1] 0.02

$sampling.time
[1] 55.16
slhck

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lwalder

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PVCAM: Fix merge conflict, that caused old and new version to both be present

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Nico Stuurman

commit sha 0908bfdb5ed1ab7dc26c9a8ed108ae3b4cec140a

Merge pull request #1085 from nicost/svnMerge [PVCAM] Added support for V3 frame metadata that uses different format for timestamps and exposure time (starting with Kinetix)

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karl@rstudio.com

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Update NEWS

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issue openedmicro-manager/micro-manager

"Bad" profile can prevent MM from starting

There now have been several instances of users reporting that the MM splash screen does not show, which can be remedies by removing the profiles (from User\AppData\Local\Micro-Manager\UserProfiles). For instance, see: https://forum.image.sc/t/mm2-0-quit-and-wont-start-anymore/47293. Hopefully, loading one of these profiles running under a debugger will reveal enough of the underlying cause to decide how to prevent this from happening.

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karl@rstudio.com

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Open source companion commit for https://github.com/rstudio/rstudio-pro/pull/2296

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karl@rstudio.com

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Update NEWS

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bio7

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Updated ImageJ plugin to version 1.53h47 16.

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issue commentrstudio/rstudio

websites should not auto-preview by default when supporting files (e.g. _site.yml or css) are changed

reopening and assigning to Verifying state per new bug workflow

jjallaire

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issue commentrstudio/rstudio

roundtrip of raw text inline not handled correctly by visual editor

reopening and assigning to Verifying state per new bug workflow

jjallaire

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issue commentrstudio/rstudio

pasting cells from mac excel results in both a table and an image

Reopening and assigning to Verifying state per new bug workflow

jjallaire

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