mdoube/BoneJ 25
A collection of plugins for bone image analysis in ImageJ
Plugins for bone image analysis
Fiji Is Just ImageJ
Fiji plugins for pQCT image analysis.
Collection of bone- and BoneJ-related ImageJ macros and scripts
BoneJ2 - the next gen version of BoneJ in development
mdoube/densityDistributionHowTo 0
The instructions for using density distribution ImageJ plug-in, which is included in boneJ
Code the TBL has made public with publications
Drishti
Friendly base POM for all SciJava-based software
issue closedfiji/fiji
How can I save 16 bit images sequence to amira ascii format
How can I save 16 bit images sequence to amira ascii format. Works when images are 8 bits.
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gitlabspy
push eventfiji/fiji-lib
commit sha c6647c9fdd04a548cab7cd60846a8d7bf3fa620f
Bump to pom-scijava 30.0.0 This is not strictly necessary, but pom-scijava 12.0.0 + pom-scijava-base 2.0.0 do not have a version property for net.imagej:ij, instead using the older imagej1.version, which can make attempts at overriding the version unexpected.
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pull request commentimagej/imagej-updater
extend error message with a link to the forum
How about creating a new topic ImageJ FAQ on the forum, where we can group frequently asked questions like this one, and then link to it with a more concise link?
Related: we used to have https://imagej.net/FAQ as well, but it's currently still read-only, and will likely take a while before the wiki is fully migrated.
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PR opened imagej/imagej-updater
Hi @frauzufall, @ctrueden,
I would like to add a link to the forum to an error message. We are repeatedly answering that question on the forum and I think it might help to have that short-cut directly in the error message.
Let me know what you think!
Cheers, Robert
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issue commentnci/drishti
Can't load *.mask.pvl.nc file created by Drishti Paint into Drishti Render
Thank Ajay!
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issue commentnci/drishti
Can't load *.mask.pvl.nc file created by Drishti Paint into Drishti Render
Hi Daurica, The rawmask file stores the mask values, so if the mask values you have chosen are closer to 0 i.e. 1,2,3,4... etc, then you will have to move your transfer function closer to the left side - closer to 0. If you don't want to do that then you can just reimport the rawmask volume (rawmask.pvl.nc.001 file) using DrishtiImport - this will remap the values between min and max.
Cheers, Ajay
On Sat, Jan 16, 2021 at 10:52 PM Daurica notifications@github.com wrote:
Hi, I have a similar problem.
I exported .rawmask, however file.rawmask doesn't seem to be uploaded in Drishti, and file.rawmask.pvl.nc gives me a blank volume, and mix tag command doesn't seem to be doing anything. I was wondering if I need to be in hires mode for that? If so, as soon as I press F2 Drishti crashes..
Hope for some advice and thanks in advance! Cheers
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issue commentimagej/imagej
Create a Windows installer for ImageJ2/Fiji
This issue has been mentioned on Image.sc Forum. There might be relevant details there:
https://forum.image.sc/t/fiji-updater-problem-flimj-installation-error/47560/5
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push eventfiji/TrackMate
commit sha 93df81052d3e1a3c8b6cd45bbaa50f3190158253
A utility that returns an iterable over a spot in an ImgPlus. Takes into account whether the spot has a ROI or not, and borderline cases.
commit sha e58971fec52104635831dc00545e3e0a6eba5172
Don't sample SpotRoi over singleton dimension.
commit sha e2bcf0a70125cae3cbf0d95a36c09ae485bcf204
Fix the label exporter action. - It was not taking into account the calibration. - Now it sample ROIs if the spot has one.
commit sha 41262ae85007c1923142f88b5f6466084c4fe6bd
Utility to reslice an ImgPlus at frame and channel. Used repeatingly in TrackMate, but calling deprecated methods.
commit sha d317ce5d6f3bdb292ff52d2430e9e3179595bcf1
Don't rely on removed TMUtils method to find z-axis.
commit sha 12a01fe073f49badb11d06cbd729b5d0d5c6c7b6
Remove deprecation warnings due to the use of HyperSliceImgPlus.
commit sha 95fd4dee0ee480176ad6431866f4c2a0486ee88f
Use the util to get a spot iterable in the spot intensity analyzer.
commit sha a3659d8980e293dc0be19e8e67ba4e241f29e989
Don't use methods removed in TMUtils to find an axis.
commit sha 4e1dad5b069b0164dfcb86eb785c43f7259077cc
Update AbstractSemiAutoTracker so that it does not rely on deprecated code.
commit sha fa25db558468cacdd140f21504cb1ff6a5e8bdf5
Update the LAP frame-to-frame linker so that it does not use deprecated code.
commit sha 4ab961e60c2727abebdef624b4a46300819f5173
Code style changes.
commit sha 19880cc41b9aa95d326a98457d2d8ab785df12ab
Rework NN tracker so that it does not use deprecated code.
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push eventfiji/fiji
commit sha ff79d46a26380a0715b54ea648c9526bdc578fba
Bump to next development cycle Signed-off-by: Mark Hiner <hinerm@gmail.com>
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commit sha 3dabdf0a1c6a566ece7170a5b92530489a550153
Bye bye 2020!
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issue commentnci/drishti
Can't load *.mask.pvl.nc file created by Drishti Paint into Drishti Render
Hi, I have a similar problem.
I exported .rawmask, however file.rawmask doesn't seem to be uploaded in Drishti, and file.rawmask.pvl.nc gives me a blank volume, and mix tag command doesn't seem to be doing anything. I was wondering if I need to be in hires mode for that? If so, as soon as I press F2 Drishti crashes..
Hope for some advice and thanks in advance! Cheers
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startedekmett/codex
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push eventfiji/fiji
commit sha 3a9a9f464a626b7c2db4025c333511ecec8680f2
Bump to pom-scijava 30.0.0 * Updates SNT components. See https://github.com/scijava/pom-scijava/pull/155 * Removes Kappa/FilamentDetector version pins
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commit sha 0667395bcac20e5d7a371ac9f468522c74367d59
Bump to next development cycle Signed-off-by: Mark Hiner <hinerm@gmail.com>
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created tagimagej/imagej
:sparkler: Open scientific N-dimensional image processing :microscope:
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Bye bye 2020!
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commit sha 6896c8106702aba398f58e3cf7add48e13ac171c
Update snapshot version
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commit sha 75755497599c22faeb0948d4a9a113d31e46c4ce
Bump to pom-scijava 30.0.0
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startedfission-suite/ipfs-haskell
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startedOpenZeppelin/openzeppelin-contracts
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commit sha 207341080c332b395668d51f015416b94969e382
Bump to next development cycle Signed-off-by: Mark Hiner <hinerm@gmail.com>
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created tagimagej/ij1-patcher
Extension points for ImageJ 1.x via runtime patching to support (limited) headless operation and ImageJ2's legacy layer
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commit sha 00d9ae3f8e174ecc80fa05058123ecf8b98e1fc8
Bye bye 2020!
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commit sha 63d0fba3faa86aec639ac8a0b73f0a70123adafc
Bump to pom-scijava 30.0.0
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startedfirebee-org/FPGA_by_Fredi
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commit sha 54c3af15afb16986c7937088a8b753ceba45327f
Update to ij 1.53d
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commit sha bf754cbe469f604b126bf398120b09373cf955e4
Bump to next development cycle Signed-off-by: Mark Hiner <hinerm@gmail.com>
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commit sha 7b4576adb87a2f6da00ee8a253eb0330d9d238b3
The end of 2020!
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