haplotypic duplication identification tool
A fast K-mer counter for high-fidelity shotgun datasets
scaffolding based on Hi-C, 10X linked reads, linkage disequilibrium information.
64,976 whole genome haplotypes from the Haplotype Reference Consortium and efficient algorithms to use them
Simple program to cap mapping quality in a given alignment file
Bayesian haplotype-based polymorphism discovery and genotyping.
Scaling up reference quality assembly of vertebrate genomes
Setup for genotype likelihood calculation for the Haplotype Reference Consortium Release 1
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
A fast pairwise aligner for genomic and spliced nucleotide sequences
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new species from sanger tol
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