profile
viewpoint
Laurence Rowe lrowe @Calico San Francisco, CA Principal Data Architect @Calico. Previously @Netflix, @ENCODE-DCC, @Plone.

ggozad/Backbone.xmpp 106

A storage layer for syncing Backbone models/collection with XMPP Pub-Sub nodes in real-time

ggozad/jarn.xmpp.core 16

Microblogging and messaging using XMPP for Plone

ggozad/jarn.xmpp.collaboration 12

Real-time collaborative editing for Plone

ENCODE-DCC/snovault 9

The SnoVault general purpose hybrid object-relational database

lrowe/deliverance-benchmark 2

Deliverance / XDV benchmark

lrowe/collective.blueprint.wikipedia 1

importing wikipedia articles into plone (using collective.transmogrifier)

lrowe/experimental.cssselect 1

Experimental version of lxml.cssselect

pull request commentENCODE-DCC/encoded

ENCD-5098 Fix import_data to use changed load_all in #2351

I've identified the commit causing the failure but need to investigate why it should be a problem (PATCH-ing on second pass of import data feels like the 'correct' thing to do.)

lrowe

comment created time in 3 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 0ee8b96e83cd9c9de04a74b58c150ff4f5e62414

igv visualiztion

view details

push time in 6 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 93e287f7af3d84b132184f2a359d58a5e5301b51

igv visualiztion

view details

push time in 6 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 34bd1e80c364ec2dec49a8407e37f19e4d31aaec

igv visualiztion

view details

push time in 6 days

PR opened ENCODE-DCC/encoded

IGV visualization

Ideally the IGV url would be configurable, but it exists in both JS and Python code so doing so would require a bigger refactoring.

We use IGV for visualizing vcf files, but that requires enabling tabix indexing to be performant, so have left that configuration commented out.

+144 -1

0 comment

5 changed files

pr created time in 6 days

create barnchENCODE-DCC/encoded

branch : lrowe-igv

created branch time in 6 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 58a876f6fbd69bb58a29b6d2423cd7eb105a2add

Fix error handling and url guessing in import-data.

view details

Laurence Rowe

commit sha f907843e4fb57190a677f7f9da42af23f16e7941

Allow aliases as identifying property for import-data.

view details

push time in 8 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha f907843e4fb57190a677f7f9da42af23f16e7941

Allow aliases as identifying property for import-data.

view details

Laurence Rowe

commit sha 81e67a2cc4efefdbce6dede880a953569e75e2ef

Consistently use binary streams to avoid problems with parsing excel files.

view details

push time in 8 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha fe9c823e28d268582d0b40b4c89dff17d8f2d08d

Allow adding of users without uuid when importing data.

view details

push time in 8 days

create barnchENCODE-DCC/encoded

branch : lrowe-fix-import-data-tests1

created branch time in 8 days

push eventENCODE-DCC/encoded

Cricket Sloan

commit sha 36e173b8890a4c9eec6de37ea557ee96ff9658af

Change phase 2 from PUT to PATCH

view details

push time in 8 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 179c29070d560e6bc1307a9eef12050ae8409e8d

Fix import_data to use changed load_all in #2351

view details

Laurence Rowe

commit sha fe9c823e28d268582d0b40b4c89dff17d8f2d08d

Allow adding of users without uuid when importing data.

view details

Laurence Rowe

commit sha 58a876f6fbd69bb58a29b6d2423cd7eb105a2add

Fix error handling and url guessing in import-data.

view details

push time in 8 days

create barnchENCODE-DCC/encoded

branch : lrowe-fix-import-data-tests

created branch time in 8 days

push eventENCODE-DCC/encoded

Phil

commit sha 7858efe2049cc60853d1720954a81aed06743dde

ENCD-5089-add-back-account-creation-msg (#3139)

view details

Ben Hitz

commit sha e266d501d5498adc62f25df2d648d61b76571acb

Update to 96.0 (#3143)

view details

Laurence Rowe

commit sha 179c29070d560e6bc1307a9eef12050ae8409e8d

Fix import_data to use changed load_all in #2351

view details

Laurence Rowe

commit sha fe9c823e28d268582d0b40b4c89dff17d8f2d08d

Allow adding of users without uuid when importing data.

view details

Laurence Rowe

commit sha 58a876f6fbd69bb58a29b6d2423cd7eb105a2add

Fix error handling and url guessing in import-data.

view details

Cricket Sloan

commit sha 36e173b8890a4c9eec6de37ea557ee96ff9658af

Change phase 2 from PUT to PATCH

view details

Laurence Rowe

commit sha 76b20188d4c3aeca63940db324a7dac8a1df76d7

Allow aliases as identifying property for import-data.

view details

Laurence Rowe

commit sha deac3dd50d094a428077b4c6d61f4cd1ac960a3c

Consistently use binary streams to avoid problems with parsing excel files.

view details

push time in 8 days

pull request commentENCODE-DCC/encoded

Fix import_data to use changed load_all in #2351

ENCD-5098

lrowe

comment created time in 16 days

push eventENCODE-DCC/encoded

Casey Litton

commit sha 817479901f8cec42b86f840fd28d14ba0bdffb58

ENCD-test1 Update change log for test (#18)

view details

caseylitton

commit sha 80afe4f05e46013902079360b63611da36b68bf2

test master push

view details

Casey Litton

commit sha ee46b6f3f7223af98b5c72ba3bda131d3197bc15

Revert accidental commits to change log (#2383)

view details

Casey Litton

commit sha 9df9cd124407df7f1318807c1f3528b71763c206

Merge pull request #2384 from ENCODE-DCC/update-master-to-v71x0 Update master to v71x0

view details

Casey Litton

commit sha 8f2d5ac20447396de589e48b58bb823368ab0b6c

Merge pull request #2385 from ENCODE-DCC/update-master-to-v72x0 Update master to v72x0

view details

Casey Litton

commit sha 7217da2fa44ed0e43125085c1be6e3a76c76ac4e

Merge pull request #2386 from ENCODE-DCC/update-master-to-v73x0 Update master to v73x0

view details

Casey Litton

commit sha d112a182155f1bf8a433b0e7b5a1cf80a2431e7b

Merge pull request #2387 from ENCODE-DCC/update-master-to-v74x0 Update master to v74x0

view details

Casey Litton

commit sha 81bad32316ab99d913a142acb3845f8bf19b2082

Merge pull request #2573 from ENCODE-DCC/v75x1-release V75x1 release

view details

Casey Litton

commit sha e5586b8b8cefd4789641428ccfe81ccb1ed388ea

Merge pull request #2574 from ENCODE-DCC/v76x0-release V76x0 release

view details

Casey Litton

commit sha 78539963ae6f150544f3218f08149a8e838b73b8

Merge pull request #2575 from ENCODE-DCC/v77x1-release V77x1 release

view details

Casey Litton

commit sha 5c944483d3f09cb3547a38c6a82af041ba543fa1

Merge pull request #2576 from ENCODE-DCC/v78x0-release V78x0 release

view details

Casey Litton

commit sha 0bbd8158b9c6506291d2dcabf28f41b4aded345c

Merge pull request #2577 from ENCODE-DCC/v79x0-release V79x0 release

view details

Casey Litton

commit sha e7d9ca170cdbfbb892746dd9485f2aed0fbdda24

Merge pull request #2579 from ENCODE-DCC/v80x0-release V80x0 release

view details

Casey Litton

commit sha 3c5f0b992a94e0d1b798cc9dffcfb5a32f664b32

Update master to v81.0 (#2609)

view details

Casey Litton

commit sha 4338c602fdbb8ed7ed8d335cb7d7b5e61a287d96

Revert "Update master to v81.0 (#2609)" (#2610) This reverts commit 3c5f0b992a94e0d1b798cc9dffcfb5a32f664b32.

view details

Casey Litton

commit sha 44cba28a25b0a0bb9b184dc3e5c58eaa0ef9fa59

Merge pull request #2611 from ENCODE-DCC/update-master-to-v81.0

view details

Casey Litton

commit sha b83462429806ae783326f22e6b5e15fdc82fc51d

Merge pull request #2650 from ENCODE-DCC/update-master-82.0 Update master 82.0

view details

Casey Litton

commit sha 78466986b66ff03b6d55bb1e96aa5ea1031c1eb9

Merge pull request #2706 from ENCODE-DCC/dev Release v83.0

view details

Casey Litton

commit sha c0dff27c1a49711b4252638679605af64a0621ef

Merge pull request #2732 from ENCODE-DCC/dev Update to v84.0

view details

Phil

commit sha c15df881dfff6c3681d2c14b5c60379b1f50ef40

ENCD-4597-show-all-datasets (#2733)

view details

push time in 16 days

push eventENCODE-DCC/encoded

Laurence Rowe

commit sha 32bbef83467bf7745f08feb74a8cacc7c08108aa

Allow adding of users without uuid when importing data.

view details

Laurence Rowe

commit sha 9e4dbe9a2998fb4c730e4f5f628f307abd9b8305

Fix error handling and url guessing in import-data.

view details

Cricket Sloan

commit sha 0bfc873a5a3721787389833b9274e086ee0e562a

Change phase 2 from PUT to PATCH

view details

Laurence Rowe

commit sha 5ed2bad65755e678125f1c000d259150f39d9884

Allow aliases as identifying property for import-data.

view details

Laurence Rowe

commit sha 617fb50a56e00d3630b53f35cb692bc0078903fd

Consistently use binary streams to avoid problems with parsing excel files.

view details

push time in 16 days

pull request commentENCODE-DCC/encoded

Isolate session / session_properties dependencies to App

I think this is still useful and is the basis for server rendering for logged in pages which I now have working. I'll work on rebasing.

lrowe

comment created time in 21 days

pull request commentENCODE-DCC/snovault

accel_redirect_header setting

I think this is generally useful as it makes it possible to host only in Apache. Do make sure that the configuration change makes it through to encoded too as without it the file is proxied through Python.

To test curl a localhost download url directly on the server. You should see an empty response with a an X-Accel-Redirect header. Test when accessing through Nginx that the file is downloaded.

lrowe

comment created time in 21 days

pull request commentENCODE-DCC/snovault

Make nginx dev config respect forwarded proto.

This nginx-dev.conf is only used in development when running bin/dev-servers. The change is only really applicable when you're developing authentication stuff, in my case I had the Google Cloud Auth proxy in front of cloud instance and wanted to proxy back to my local development machine over an ssh tunnel.

lrowe

comment created time in 21 days

delete branch ENCODE-DCC/encoded

delete branch : calico-crispr-dev

delete time in 4 months

create barnchENCODE-DCC/encoded

branch : calico-crispr-dev

created branch time in 4 months

PR closed mlinderm/myseq-vcf

Fix cBytes calculation in TabixIndexedFile.records

The ternary operator binds more tightly than addition.

I've not attempted to make a test for this yet. The bug occured when requesting an interval spanning more than one block.

+2 -2

2 comments

1 changed file

lrowe

pr closed time in 4 months

pull request commentmlinderm/myseq-vcf

Fix cBytes calculation in TabixIndexedFile.records

Of course. The fix in your commit looks equivalent to me.

lrowe

comment created time in 4 months

issue commentiodide-project/pyodide

Unknown Python Version Error

Guess this is because micropip does not support the python_version environment marker which altair uses for one of its dependencies: https://github.com/altair-viz/altair/blob/master/requirements.txt#L8

emjun

comment created time in 6 months

issue commentiodide-project/pyodide

Unknown Python Version Error

I get this same error when I try to install 'altair'.

emjun

comment created time in 6 months

MemberEvent
more