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pull request commentkids-first/kf-ui-data-tracker

๐Ÿ› Hide devbar if variable not set

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@@            Coverage Diff             @@
##           master     #997      +/-   ##
==========================================
- Coverage   47.78%   47.65%   -0.13%     
==========================================
  Files         226      226              
  Lines        5745     5743       -2     
  Branches     2160     2159       -1     
==========================================
- Hits         2745     2737       -8     
- Misses       3000     3006       +6     
Impacted Files Coverage ฮ”
src/components/Header/DevHeader.js 36.95% <100.00%> (-15.13%) :arrow_down:

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๐Ÿ› Hide devbar if variable not set

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pull request commentkids-first/kf-api-study-creator

๐Ÿท Release 1.15.2

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##           master     #596   +/-   ##
=======================================
  Coverage   93.14%   93.14%           
=======================================
  Files         108      108           
  Lines        4799     4799           
=======================================
  Hits         4470     4470           
  Misses        329      329           

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:wrench: Add more settings to status query

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:recycle: Move development endpoint to features

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Merge pull request #573 from kids-first/add-settings ๐Ÿ”ง Add settings to status schema

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Merge pull request #580 from kids-first/dr-buckets-feature-flag ๐Ÿ”ง Add flag to enabled/disable DR bucket creation

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Merge pull request #581 from kids-first/investigator-name โœจ Add investigator name to study

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:label: Release 1.15.0 ## Release 1.15.0 ### Summary - Emojis: โœจ x1, ๐Ÿ”ง x2, ๐Ÿ› x3, โฌ†๏ธ x2, ๐Ÿณ x1, ๐Ÿ’„ x1 - Categories: Additions x1, Other Changes x3, Fixes x3, Ops x3 ### New features and changes - [#581](https://github.com/kids-first/kf-api-study-creator/pull/581) - โœจ Add investigator name to study - [7c147b2e](https://github.com/kids-first/kf-api-study-creator/commit/7c147b2e2da047961ca15380b8de58f9281557dd) by [dankolbman](https://github.com/dankolbman) - [#580](https://github.com/kids-first/kf-api-study-creator/pull/580) - ๐Ÿ”ง Add flag to enabled/disable DR bucket creation - [428020b5](https://github.com/kids-first/kf-api-study-creator/commit/428020b5008050c2ed318176652c6b76d932bdd6) by [dankolbman](https://github.com/dankolbman) - [#573](https://github.com/kids-first/kf-api-study-creator/pull/573) - ๐Ÿ”ง Add settings to status schema - [7c03defe](https://github.com/kids-first/kf-api-study-creator/commit/7c03defe4aa08212eebf9e64023953674150aa52) by [dankolbman](https://github.com/dankolbman) - [#579](https://github.com/kids-first/kf-api-study-creator/pull/579) - ๐Ÿ› Fix bugs from switching to Debian image - [40cf58cd](https://github.com/kids-first/kf-api-study-creator/commit/40cf58cd4c6b65558127551b7eb563a0e4c0f1e3) by [znatty22](https://github.com/znatty22) - [#578](https://github.com/kids-first/kf-api-study-creator/pull/578) - โฌ†๏ธ Bump boto3 and requests - [fa5896a0](https://github.com/kids-first/kf-api-study-creator/commit/fa5896a0364596583bfc2447af4fe7918d180b7a) by [znatty22](https://github.com/znatty22) - [#577](https://github.com/kids-first/kf-api-study-creator/pull/577) - ๐Ÿณ Switch to python:3.8-slim-buster docker img - [3ca47fd7](https://github.com/kids-first/kf-api-study-creator/commit/3ca47fd70f491080195e937004dafdb98fb1663b) by [znatty22](https://github.com/znatty22) - [#567](https://github.com/kids-first/kf-api-study-creator/pull/567) - ๐Ÿ’„ Clean up release messages - [843f0bab](https://github.com/kids-first/kf-api-study-creator/commit/843f0bab5128902332359beaca9be3e8643fcee9) by [dankolbman](https://github.com/dankolbman) - [#572](https://github.com/kids-first/kf-api-study-creator/pull/572) - โฌ†๏ธ Bump cryptography from 3.2 to 3.3.2 - [e046430d](https://github.com/kids-first/kf-api-study-creator/commit/e046430df6b9e75c4475b1d3e088428ab22f622a) by [dependabot[bot]](https://github.com/apps/dependabot) - [#566](https://github.com/kids-first/kf-api-study-creator/pull/566) - ๐Ÿ› Only verify release id if its in the response - [d27077d9](https://github.com/kids-first/kf-api-study-creator/commit/d27077d98ae0e429a2c94a4428380053fdeb06ca) by [dankolbman](https://github.com/dankolbman) - [#564](https://github.com/kids-first/kf-api-study-creator/pull/564) - ๐Ÿ› Add safeguards for trace sampler - [32e7f2e0](https://github.com/kids-first/kf-api-study-creator/commit/32e7f2e03d70463591260896a501c722825fddf2) by [dankolbman](https://github.com/dankolbman)

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:sparkles: Initial ingest_runs app

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:sparkles: New ingest run model

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:white_check_mark: Test ingest run model

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:sparkles: Add initial ingest run tasks

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:sparkles: Add initial ingest run GraphQL API

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:white_check_mark: Test ingest run GraphQL API

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:card_file_box: New ingest run migration

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:sparkles: Add ingest run events and migration

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pull request commentkids-first/kf-api-study-creator

๐Ÿ‘ท Add new workflow for sentry releases

Sorry I'm going to need to learn about Github Actions before I can comment ๐Ÿ˜ฌ

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Pull request review commentkids-first/kf-api-study-creator

๐Ÿ‘ท Add new workflow for sentry releases

 jobs:             done < .github/release_assets.txt           fi       - name: Create Sentry release-        uses: getsentry/action-release@v1

Does line 59 (- name: Create Sentry release) have to be removed too?

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pull request commentkids-first/kf-api-study-creator

๐Ÿ‘ท Add new workflow for sentry releases

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@@           Coverage Diff           @@
##           master     #595   +/-   ##
=======================================
  Coverage   92.59%   92.59%           
=======================================
  Files         108      108           
  Lines        4795     4795           
=======================================
  Hits         4440     4440           
  Misses        355      355           

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pull request commentkids-first/kf-api-study-creator

๐Ÿ”ง Increase timeout for Cavatica tasks

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@@           Coverage Diff           @@
##           master     #594   +/-   ##
=======================================
  Coverage   92.59%   92.59%           
=======================================
  Files         108      108           
  Lines        4795     4795           
=======================================
  Hits         4440     4440           
  Misses        355      355           

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:construction::sparkles: Set download endpoints to use http in dev mode

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issue openedkids-first/kf-api-study-creator

Cavatica sync exceeds timeout

Sentry Issue: STUDY-CREATOR-Q

JobTimeoutException: Task exceeded maximum timeout value (60 seconds)
(25 additional frame(s) were not displayed)
...
  File "http/client.py", line 268, in _read_status
    line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
  File "socket.py", line 669, in readinto
    return self._sock.recv_into(b)
  File "ssl.py", line 1241, in recv_into
    return self.read(nbytes, buffer)
  File "ssl.py", line 1099, in read
    return self._sslobj.read(len, buffer)
  File "rq/timeouts.py", line 63, in handle_death_penalty
    raise self._exception('Task exceeded maximum timeout value '

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Dan Kolbman

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:bug: Add missing import

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:fire: Remove build_environments for worker

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Merge pull request #587 from kids-first/rm-build-environments ๐Ÿ”ฅ Remove build_environments for worker

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Merge pull request #586 from kids-first/missing-import ๐Ÿ› Add missing import

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commit sha 132726f86363d93e6e0d837b96becf7a5d741fb3

:label: Release 1.15.1 ## Release 1.15.1 ### Summary - Emojis: ๐Ÿ› x1, ๐Ÿ”ฅ x1, โœจ x1 - Categories: Fixes x1, Removals x1, Additions x1 ### New features and changes - [#586](https://github.com/kids-first/kf-api-study-creator/pull/586) - ๐Ÿ› Add missing import - [fdcd20a6](https://github.com/kids-first/kf-api-study-creator/commit/fdcd20a6891934b9df43774ea20fe4d3dbf69d23) by [dankolbman](https://github.com/dankolbman) - [#587](https://github.com/kids-first/kf-api-study-creator/pull/587) - ๐Ÿ”ฅ Remove build_environments for worker - [7be9e360](https://github.com/kids-first/kf-api-study-creator/commit/7be9e3600b30b3bbe24c04b4f74d3bf5d1d60776) by [dankolbman](https://github.com/dankolbman) - [#574](https://github.com/kids-first/kf-api-study-creator/pull/574) - โœจ Initial DataReview GraphQL API - [5903cbb8](https://github.com/kids-first/kf-api-study-creator/commit/5903cbb8233802c7bc4eb95e18141f6f58c0c85d) by [znatty22](https://github.com/znatty22)

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Merge pull request #589 from kids-first/release-1.15.1-๐Ÿท ๐Ÿท Release 1.15.1

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Merge pull request #961 from kids-first/footer-version-link ๐Ÿ› Fix footer backend version link

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๐Ÿ“ฆ Install react-sortable-tree-theme-file-explorer v2.0.0

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โœจ Pass batch action props to folder component

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โ™ป๏ธ Import file folder component from its own folder

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โœจ Hide path tag from tag list

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โœจ Only allow one path tag for each file

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โœจ Add option of hiding the copy download url button from file actions

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โœจ Use path tag to generate folders

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โœจ Add more fields to file node in file folder tree data

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๐Ÿ› Fix generated path with / in front

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โœจ Add folder path label to file detail with remove button

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๐Ÿ’„ Add css class used in folder component

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โœจ Add folder action buttons component

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โœจ Add folder detail list component

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โœจ Add folder detail list element component

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โœจ Add file folder component

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๐Ÿ› Add unique key to study table investigator column

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release kids-first/kf-mskcc-vcf2maf

v1.0.1

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tagv1.0.1

This is a port of MSKCCs vcf2maf repository, release v1.16.19. We have modified their Dockerfile and dropped deprecated fields from their maf output to suit the needs of Kids First and pedcBioportal

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Pull request review commentkids-first/kf-api-study-creator

โœจ๐Ÿšง Set download endpoints to use http in dev mode

 services:       - PG_HOST=dataservice-pg     depends_on:       - dataservice-pg+    ports:

Sorry, some extra files got added in. Removed

gsantia

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Pull request review commentkids-first/kf-api-study-creator

โœจ๐Ÿšง Set download endpoints to use http in dev mode

 import django_filters+from django_filters import FilterSet, OrderingFilter

nope. i like having them order alphabetically

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