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chanzuckerberg/s3mi 10

Transfer big files fast between S3 and EC2. Pronounced "semi".

colinmegill/bootcamp-resources 5

This is a repository of helpful resources for learning advanced JavaScript concepts

colinmegill/codefellows-D3js-lessons 3

Lessons for the codefellows classes on d3js. Lessons are in branches.

chanzuckerberg/cellxgene-rest-api 1

moved to chanzuckerberg/cellxgene

chanzuckerberg/elk-oidc-proxy 1

ELK OIDC authenticating proxy

colinmegill/backbone-seed 1

Backbone seed project

colinmegill/brain 1

Neural networks in JavaScript

colinmegill/conference 1

An app for conferences built around pol.is

colinmegill/data-visualization-as-interface 1

Data Visualization as Interface

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Colin Megill

commit sha 15714e9924f6aa7297ae2919f240d55cd6e6ea6b

Remove grab (#2439) * Remove grab Fixes #2438 * snapshot

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Ben MR

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Re-add bumpversion to makefile (#2443)

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Colin Megill

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PR opened chanzuckerberg/cellxgene

Remove pointer on gene
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Colin Megill

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Remove grab (#2439) * Remove grab Fixes #2438 * snapshot

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PR merged chanzuckerberg/cellxgene

Remove grab

Fixes #2438

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issue closedchanzuckerberg/cellxgene

Remove "action hand" from cursor when hovering over gene name and minihistogram

The cursor changes to a hand in the following scenarios even though there is no action to take. The cursor should remain an arrow in these scenarios:

  • [ ] Under Quick Gene Search when hovering over gene name and mini histogram
  • [ ] Under Gene Sets when hovering over gene name and mini histogram
  • [ ] Under Gene Sets when hovering over the dotted icon to the left of gene name

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Colin Megill

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Ben MR

commit sha 97caa5bcaae5010cc8b1d42c250252f187356992

Upgrade min versions of dependencies [zh2426] (#2436) * Update dependencies Flask to 2.0 Scipy etc. bumped to latest version not supporting 3.5 Others bumped to latest where possible * py min v * relax py version * revert reqs changes

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Madison Dunitz

commit sha 3ebbb0ccbf91955fa27913ac73d73298e018311c

move common code into server, update tests and makefile (#2425) * move common code into server, update tests and makefile remove backend directory, refactor update smoke tests

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Andrew Tolopko

commit sha c0263f6ce59df36a954c1ddcb7ae35fb1639b49f

#2410 update compatibility test matrix (#2431) Github Actions Workflow updates compatibility matrix: - Added MacOS Catalina and Big Sur to test compat matrix - Added Python 3.9 to test compat matrix, but avoid running 3.9 for matrix jobs that do not have `tables` pypi build available for the given env - Maintains running tests on both cellxgene main branch and latest pypi release. - Add explicit matrix exclusions for matrix combinations that will never pass (see comments). - Numerous refactorings to the workflow config to simplify matrix. Basically a rewrite. - The anndata pkg is now tested at a pinned release and at latest release, but no longer using `master` branch version. To limit cross-product explosion of matrix jobs, the pinned anndata version is only tested on py3.8 and cellxgene latest release. - Run unit and smoke tests in a single job, to improve speed, reduce workflow complexity and the number of jobs. Also fixes the redundant testing of unit tests. Within each job, the unit and smoke tests are run in separate steps for ease of troubleshooting. - Fixed termination of backend server to allow both smoke tests to run within a single job (both attempt to use 5005 port, sequentially, but first server was not being terminated). - Replaced `continue-on-error: true` with `fail-fast: false`, which allows all matrix jobs to run independently, while also ensuring the that entire workflow is flagged as failed if any matrix job fails - The `smoke-test-annotations` fail intermittently and have been disabled. Fix will be addressed in story: https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/chanzuckerberg/cellxgene/2433

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jacobrheath

commit sha e4961a579e239b4e79608fba2189d7f468a72399

feat: removing sastisfaction gh action for gh app (#2441)

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Colin Megill

commit sha 7f068cd57699cc743b7ee1d31cf16a44bf4af206

Reverse gene list order (#2432) Fixes #2420

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Andrew Tolopko

commit sha e2772d1da9aa3a33ffaab39ebfed20650d235270

#2410 reenable scheduled compatibility test (#2440) re-enable scheduled compat matrix tests on main branch; was temporarily commented out for testing on branch

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Severiano Badajoz

commit sha 5eb0ecc997df3fc921d0d316da47dc549ea22f6f

chore: update frontend packages (#2442) * run audit * migrate husky

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Colin Megill

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Colin Megill

commit sha 7f068cd57699cc743b7ee1d31cf16a44bf4af206

Reverse gene list order (#2432) Fixes #2420

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issue closedchanzuckerberg/cellxgene

Quick gene search: The latest gene added should appear at the top of the list

Right now, when you add multiple genes in the Quick Gene Search bar, the latest gene goes to the bottom of the list. We would like the latest gene to show up at the top of the list based on user feedback and for consistency with the gene sets section (the latest gene set the user creates shows up at the top of the gene sets section).

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signechambers1

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Ben MR

commit sha 97caa5bcaae5010cc8b1d42c250252f187356992

Upgrade min versions of dependencies [zh2426] (#2436) * Update dependencies Flask to 2.0 Scipy etc. bumped to latest version not supporting 3.5 Others bumped to latest where possible * py min v * relax py version * revert reqs changes

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Madison Dunitz

commit sha 3ebbb0ccbf91955fa27913ac73d73298e018311c

move common code into server, update tests and makefile (#2425) * move common code into server, update tests and makefile remove backend directory, refactor update smoke tests

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Andrew Tolopko

commit sha c0263f6ce59df36a954c1ddcb7ae35fb1639b49f

#2410 update compatibility test matrix (#2431) Github Actions Workflow updates compatibility matrix: - Added MacOS Catalina and Big Sur to test compat matrix - Added Python 3.9 to test compat matrix, but avoid running 3.9 for matrix jobs that do not have `tables` pypi build available for the given env - Maintains running tests on both cellxgene main branch and latest pypi release. - Add explicit matrix exclusions for matrix combinations that will never pass (see comments). - Numerous refactorings to the workflow config to simplify matrix. Basically a rewrite. - The anndata pkg is now tested at a pinned release and at latest release, but no longer using `master` branch version. To limit cross-product explosion of matrix jobs, the pinned anndata version is only tested on py3.8 and cellxgene latest release. - Run unit and smoke tests in a single job, to improve speed, reduce workflow complexity and the number of jobs. Also fixes the redundant testing of unit tests. Within each job, the unit and smoke tests are run in separate steps for ease of troubleshooting. - Fixed termination of backend server to allow both smoke tests to run within a single job (both attempt to use 5005 port, sequentially, but first server was not being terminated). - Replaced `continue-on-error: true` with `fail-fast: false`, which allows all matrix jobs to run independently, while also ensuring the that entire workflow is flagged as failed if any matrix job fails - The `smoke-test-annotations` fail intermittently and have been disabled. Fix will be addressed in story: https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/chanzuckerberg/cellxgene/2433

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jacobrheath

commit sha e4961a579e239b4e79608fba2189d7f468a72399

feat: removing sastisfaction gh action for gh app (#2441)

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Colin Megill

commit sha 3ab95dcf3103edd354a5b35b62ac49660407cecb

Merge branch 'main' into reverse-gene-list-order

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PR opened chanzuckerberg/cellxgene

Reviewers
Remove grab

Fixes #2438

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Severiano Badajoz

commit sha f49c3d8fe7d88dd469cdfcf90a52a6ff9e4f7885

feat: remove info drawer and reintroduce singleton categories (#2421) * refactor: drop non-session auth from frontend * remove dataset drawer and reintroduce singleton values

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Colin Megill

commit sha 6a6c941a3c79517dedad0a847daeb5346dea8721

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Severiano Badajoz

commit sha a239d8636d0a03e12670a2321338e86fb77b695d

fix: more accurate validation on geneset name (#2429)

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Ben MR

commit sha 69e159916e895a0197d272ab9b2907303123dc9a

[zh2311] Remove auth (#2427) * remove auth * Remove all auth code zh2311 * lint * remove auth from e2e tests conf

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Ben MR

commit sha ef2ab07ca036fe03bab41eb610da96f758999d4d

Clean up dead/hosted code [zh2310] (#2430) * Clean up dead/hosted code * Remove schema conversion tool and related * Remove cxg references * Remove locust * missed a spot * Remove aws secret manager * Merge branch 'main' into brodgers/2310/code-cleanup-v1 * cleanup merge

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Colin Megill

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Ben MR

commit sha 69e159916e895a0197d272ab9b2907303123dc9a

[zh2311] Remove auth (#2427) * remove auth * Remove all auth code zh2311 * lint * remove auth from e2e tests conf

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Ben MR

commit sha ef2ab07ca036fe03bab41eb610da96f758999d4d

Clean up dead/hosted code [zh2310] (#2430) * Clean up dead/hosted code * Remove schema conversion tool and related * Remove cxg references * Remove locust * missed a spot * Remove aws secret manager * Merge branch 'main' into brodgers/2310/code-cleanup-v1 * cleanup merge

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Colin Megill

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PR opened chanzuckerberg/cellxgene

Reviewers
Reverse gene list order

Fixes #2420

Reviewers

Functional:

Readability:


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Colin Megill

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delete branch compdemocracy/polis

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pull request commentcompdemocracy/polis

Demo: client-admin using razzle with customizations

Ok, @patcon if you want to do the minimal work you describe here to make this webpack instead of razzle, I'll do a review. Let me know.

patcon

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pull request commentcompdemocracy/polis

Demo: client-admin using razzle with customizations

minimal cost to walk it back and remove razzle if someone later feels like hand-assembling the webpack config later.

If this PR was a migration from gulp to webpack, as you suggest here, I think it would be an easy decision to merge

patcon

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Colin Megill

commit sha de0312906135997739762f5aeac2cb8bcf136743

Spinner on color by geneset when closed (#2412) * take 2 * take 2.1 * bruce test * remove component did mount * working

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delete branch : colinmegill/geneset-color-spinner-2

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issue closedchanzuckerberg/cellxgene

Add a loading spinner to gene set colorby

See document for gene sets performance improvement.

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maniarathi