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If you are wondering where the data of this site comes from, please visit https://api.github.com/users/brtnfld/events. GitMemory does not store any data, but only uses NGINX to cache data for a period of time. The idea behind GitMemory is simply to give users a better reading experience.
Scot Breitenfeld brtnfld The HDFgroup, CGNS Champaign, Illinois

HDFGroup/build_hdf5 13

Scripts for building HDF5 for various platforms and compilers

brtnfld/mpi_io 3

mpi io tests

brtnfld/CGNS 0

The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. All development work and bug fixes should be based off the 'develop' branch, CGNS uses the branching model Gitflow. https://cgnsorg.atlassian.net is used for issue tracking.

brtnfld/cgns.github.io 0

CGNS public webpages and documentation, http://cgns.github.io

brtnfld/CLAMR-1 0

Cell-Based Adaptive Mesh Refinement

brtnfld/DLS 0

Diamond Light Source/ HDF5 benchmarking code

brtnfld/ECP-ST-CAR-PUBLIC 0

The Exascale Computing Project Software Technologies Capability Assessment Report - Public Version

pull request commentHDFGroup/hdf5

Disable fortran warning

Yes, that would be good.

byrnHDF

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Scot Breitenfeld

commit sha 794acf489fa093a3a119723c7cea74cb2880624b

Fixed failure on BE with xlf (#968) * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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Scot Breitenfeld

commit sha 01fe2549a36d7635b2cbe6f6a57cbcce29c1335b

Rework of PR #826 (#972) * H5Fget_name_f fixed to handle correctly trailing whitespaces and newly allocated buffers. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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Gerd Heber

commit sha cf25524474a4012a70cc2bdb6eaddc402b5ea136

A batch of life-cycle examples for different modules (#654) * Create a tag file for permalinks. * Added DOXYGEN_TAG_FILE. * Added Doxygen life-cycle examples for different modules. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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Allen Byrne

commit sha 6d15c45225e6b5202a4c1cfba2587ec0021de666

Synch CMake doxygen options with autotools configure (#983)

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Allen Byrne

commit sha f679c6ea28599669a3961068b04b415377c64b8b

Small doxygen fixes plus simple doc fixes (#989) Change doxygen generated file location Clang format override for flags

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Allen Byrne

commit sha 216f5ba65e21cef46ce23060fb57cc9f1706f22a

Sync CMake java macros with cmake repo (#982)

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Allen Byrne

commit sha 163d40dd4255cf5623b3b8a6dc83ffbd8926bb1f

Correction of pkg-config compile script. (#974) * Correction of pkg-config compile script. * Reword note.

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Larry Knox

commit sha 919f9daec6f397dfdf3fd41d2ecf002d197db293

Update copyright headers with reproduction notice in 5 files (#993) * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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Alessandro Felder

commit sha 8e06298ecfde5eb647b39cfe0dab70005f092199

Add high-level set/get for `unsigned long long` attributes. (#973) * add ULL attr set/get signatures to LT public API * add LT implementation of ULL set/get attribute * fix copy-paste typo in test comment * add ULL test data * define ullong attr name global variable * add LT tests for ULL attr set/get * Committing clang-format changes * correct type passed to lt get attr test for ULL * update RELEASE.txt with added ULL set/get functionality Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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Allen Byrne

commit sha b58f8540ac3c416e1d833aad243a0df35ec4a616

Fix various warnings and issues in doxygen doc generation (#994) * Fix various warnings and issues in doxygen doc generation * Add new file to list

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Allen Byrne

commit sha f6f1a0234410e2cf13f0a078c3499a33e5bd056b

Update examples version because of HDFFV-11269 (#998)

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Jan-Willem Blokland

commit sha 7c973deaf1e602cf165a39860e574a9b5468d164

H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() … (#933) * H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() function - Made a small improvement for H5Z_xform_noop() function. Now, the function will also return TRUE if the data transform function expression = "x". For this case, the HDF5 library behaves in a similar fashion as the case when no data transform function has been specified. - Improved the inline documentation of the function H5Z_xform_create() such it is more inline with the rest of the code. * Committing clang-format changes * H5Ztrans: (feature) Added 3 tests for improved H5Z_xform_noop() function - Added serial test with data transform expression = "x" to verify the improved H5Z_xform_noop() function behaves as expected. - Added 2 parallel tests with data transform expression = "x" in combination with a filter. Before, these tests will fail but with the improved H5Z_xform_noop() function they work and result in the expected behavior. - Small bug fix for one of parallel filter tests. * Committing clang-format changes * H5Ztrans: (feature) Added release note about detection of the simple data transform function "x". - Added a brief explanation about the implemented improvement of the detection of the simple data transform function "x" to the RELEASE.txt file. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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jhendersonHDF

commit sha cd2ca91875be7d3ee98ab0131c32b9ee072509e5

Fix several warnings (#720)

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Allen Byrne

commit sha 1c892fb41fb5439d3b4a69fd3cd9d25e4aa2ee6e

Fix java warnings (#1005)

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Scot Breitenfeld

commit sha ed93ad89f85b0f48728ab0ae4ad5bcb01aed32d7

Merge remote-tracking branch 'upstream/develop' into develop

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Scot Breitenfeld

commit sha 20b0f1f3ad03813f40718def9874474ef9cb0b66

Added missing HDF5 include (CMake) (#63)

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Mark (he/his) C. Miller

commit sha e153bf9d8ef79c5728815df06b85a582328e126c

Feature direct write zfp array (#43)

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Scot Breitenfeld

commit sha dff834166583c7a0fa88c6efc2f263f6910fbc4d

Merge remote-tracking branch 'upstream/master'

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issue commentLLNL/H5Z-ZFP

Build error with CMake

Fixed in PR https://github.com/LLNL/H5Z-ZFP/pull/63/files

brtnfld

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Scot Breitenfeld

commit sha d4596484c4e02873cc4fcfe365c38eb5b6d99bb7

fix for Issue #65

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issue openedLLNL/H5Z-ZFP

Build error with CMake

With Cmake 3.12.4, when I try to build with:

cmake \
-D CMAKE_BUILD_TYPE=Release \
-D CMAKE_INSTALL_PREFIX=$PWD/h5z-zfp \
-D CMAKE_PREFIX_PATH="$HDF5" \
..

I get the error:

CMake Error at src/CMakeLists.txt:28 (install): install TARGETS given no ARCHIVE DESTINATION for static library target "h5z_zfp_static".

On another machine with cmake 3.17 it works.

created time in 6 days

issue openedLLNL/H5Z-ZFP

Add testing for CMake builds.

Testing is missing for CMake builds.

created time in 7 days

PR opened LLNL/H5Z-ZFP

Added missing HDF5 include (CMake)

For shared builds the HDF5 include directory was missing (causing CMake builds to fail).

+2 -1

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Scot Breitenfeld

commit sha 521a4743fe6ef71cab74fae692a9f070ff24d76a

added HDF5 include dir for shared cmake builds

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Jan-Willem Blokland

commit sha 497e94204db6579a92b728e13aec699e76cb8f96

CMake: (fix) Autotools build HDF5 (#59) * CMake: (fix) Autotools build HDF5 - Fixed the issue for not able to find the hdf5.mod Fortran module file in the case case that HDF5 has been built using the autotools. - Fixed incorrectly set of the variable HZP_ZFTP_WITH_OPENMP in the h5z_zfp-config.cmake file. * Fortran: (fix) random number generation and messages - Switched from a processor-dependent seed value to a user specified seed value. This avoids the issue that the one of Fortran test sometimes fails. - Set the appropriate unit to external unit specifier of the various write statements. As result if one of the test fails the log on github will provide you with more useful information. * Fortran: (fix) Added the suggestions of our review discussion. - Implemented quad precision PI value and cast this value to double one needed for the computation. - Added some inline documentation. * Fortran: (fix) Changed REAL128 declaration to C_DOUBLE to be more portable.

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Mark (he/his) C. Miller

commit sha 20b893a1b499959f339bb0eb64df6f97f4e34397

Test and fix working with HDF5-1.12 (#62) * add note about mem. manager * adjust ZFP_HOME checking logic

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Scot Breitenfeld

commit sha 2e4e3d4b88b1dd8ef6a26b730232a6b91ad13315

Merge remote-tracking branch 'upstream/master'

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issue commentLLNL/H5Z-ZFP

Test across HDF5 library versions 1.8, 1.10 and 1.12

It was issue #61, H5MM_xfree/free

https://github.com/LLNL/H5Z-ZFP/issues/61

markcmiller86

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issue commentLLNL/H5Z-ZFP

memory errors with H5Z-ZFP on 1.12.0 with free() but not H5MM_xfree()

It is tricky because on the one hand it would be nice to skip the test if HDF5 was built in Debug mode (mainly for CI testing), but it would also be useful for a user to know that there could be an issue with the HDF5 build. It is not at all obvious from the error what the problem could be, it should probably be documented as a known issue.

markcmiller86

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issue commentLLNL/H5Z-ZFP

Test across HDF5 library versions 1.8, 1.10 and 1.12

How it works now with CGNS is we have a script that downloads the latest version of CGNS (or older versions). It then uses the builds from Daily testing for various checks. If any of the tests fail, it sends an email notification. We can add people to the notification list. This is all automatic.

I played around with modifying the script for H5Z-zfp, but I ran across the issue with the debug HDF5 builds. So that is the only issue we would need to address.

markcmiller86

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issue commentLLNL/H5Z-ZFP

memory errors with H5Z-ZFP on 1.12.0 with free() but not H5MM_xfree()

Is there a way to tell in what mode HDF5 was built from the installation files?

markcmiller86

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issue commentLLNL/H5Z-ZFP

Test across HDF5 library versions 1.8, 1.10 and 1.12

Would you like H5Z-ZFP added to our CI at HDF5? It would be similar to testing CGNS with HDF5 1.8, 1.10, 1.12 on various platforms and compilers.

markcmiller86

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Scot Breitenfeld

commit sha 92acf43e38ab845aa3623df3546462a621cbf953

meeting notes added

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Scot Breitenfeld

commit sha a5d2ac7e9a47921fcc5edae5303069da5b878b4c

Merge branch 'develop'

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Scot Breitenfeld

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meeting notes added

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Michael S Breitenfeld

commit sha fcd00a7ea90b9a27054003f8a40f38892e784e74

timing

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Scot Breitenfeld

commit sha a12e8b3173128e9aa904decb5f713f3691659ff1

test

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Scot Breitenfeld

commit sha 78f4aa13d59a3fe7ac51b6a5feb9f9d9df82014f

test

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Scot Breitenfeld

commit sha f3f1d8a4dba9902a165e8b305ca2ca08077cdbf9

added cmake build

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Scot Breitenfeld

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added cmake build

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Scot Breitenfeld

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Scot Breitenfeld

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